View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_high_14 (Length: 300)
Name: NF5193_high_14
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 7809952 - 7810225
Alignment:
| Q |
14 |
atccaagccacacattatttattaccacatgcagttttaatacaataaaaataaataaaaggtttaaatatacacggtacttcgtcctctgaacatttca |
113 |
Q |
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| T |
7809952 |
atccaaaccacacattatttattaccacgtgcagttttaatacaataaaaataaatatatggtttaaatatacacggtacttcgtcctctgaacatttca |
7810051 |
T |
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| Q |
114 |
cgggagaggaacctaacccctaaactttggatagtagcttgtttatcaactttgtatagctgatcaaatta-ttttgtcgaatgatttattcactaatct |
212 |
Q |
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| T |
7810052 |
cgggagaggaacctaacccctaaactttgggtagtagcttgtttatcaactttgtatagctgatcaaattacttttgtcgtataatttattcactaatct |
7810151 |
T |
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| Q |
213 |
cgatttcataaccatcatgtacaaagtttaatttctatatataatgtaagtgtaaaa--atatagacagtcatg |
284 |
Q |
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| T |
7810152 |
caatttcataaccatcatgtacaaagtttaatttctatatataatgtaagtgtaaaaatatatagacagtcatg |
7810225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 7809862 - 7809907
Alignment:
| Q |
87 |
acggtacttcgtcctctgaacatttcacgggagaggaacctaaccc |
132 |
Q |
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| T |
7809862 |
acggtacttcgtcctgtgaacatttcacgggagaggaacctaaccc |
7809907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 19060644 - 19060750
Alignment:
| Q |
22 |
cacacattatttattaccacatgcagttttaatacaataaaaataaataaaaggtttaaatatacacggtacttcgtcctctgaacatttcacgggagag |
121 |
Q |
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|||||||||||||||||| |||||| |||||||||| |||| | |||| ||||||||| |||||||| |||| | ||| ||||||||| | || |||| |
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| T |
19060644 |
cacacattatttattaccgcatgcacttttaatacattaaacacaaatgaaaggtttagatatacactttactccctccaatgaacatttaatggaagag |
19060743 |
T |
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| Q |
122 |
gaaccta |
128 |
Q |
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| T |
19060744 |
gaaccta |
19060750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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