View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_high_19 (Length: 281)
Name: NF5193_high_19
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 16906788 - 16906537
Alignment:
| Q |
12 |
atgagctaacaaagacgatcacattatcatctagtttccagaccttggttaaagttgtattgaagatattttgattaatgaaattatataagttttctcc |
111 |
Q |
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| T |
16906788 |
atgaactaacaaaggcaatcacattatcatctagtttccagaccttggttaaagttgtattgaagatattttgattaatgaaattatataagttttctcc |
16906689 |
T |
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| Q |
112 |
tatnnnnnnntgtannnnnnnngtgaatagttaaatgtacactttattctttcgtaaatnnnnnnnnnnnnngtgcatttattctaatatcaaatcatta |
211 |
Q |
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| T |
16906688 |
tataaaaaaatgta-tttttttgtgaatagttaaatgtacactttattctttcgtaaat--aaaaaaaaaaagtgcatttattctaatatcaaatcatta |
16906592 |
T |
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| Q |
212 |
tgtaagtagaaaagcaatcaagcaaacgtgcaagtcaaaaagatagtatatatgt |
266 |
Q |
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| T |
16906591 |
tgtaagtagaaaagcaatcaagcaaacgtgcaagtcaaaaagatagtatatatgt |
16906537 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 32663806 - 32663846
Alignment:
| Q |
66 |
ttgtattgaagatattttgattaatgaaattatataagttt |
106 |
Q |
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| T |
32663806 |
ttgtattgaaaatactttgattaatgaaatgatataagttt |
32663846 |
T |
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