View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5193_high_21 (Length: 273)
Name: NF5193_high_21
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2003920 - 2004170
Alignment:
| Q |
1 |
gattagaaactatgtgattttattagcaatatactactaagtctcaatcaattcaaatgattttatgtgtgggtacaagaatccaaatatatattttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2003920 |
gattagaaactatgtgattttattagcaatatactacaaa-tctcaatcaattcaaatgattttatgtgtgggtacaagaatccaaatatatattttaca |
2004018 |
T |
|
| Q |
101 |
ccataaatttcatataagagaaattgaatgagtcgtgaatatattatatgatttttctaatgtttccttatgcatatatgaaagatcgaactttacatta |
200 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2004019 |
ccataactttcttataagagaaattgaatgagtcatgaatatattatatgatttttctaatatctccttatgcatatgtgaaagatcgaactttacatta |
2004118 |
T |
|
| Q |
201 |
aatggttaagtcggtgtttggttcaccgtggtgtgaacgcaaccgtgtgttt |
252 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2004119 |
aatggttaagccggtgtttggttcacggtggtgtgaacgcaaccgtgtgttt |
2004170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 2009920 - 2010067
Alignment:
| Q |
1 |
gattagaaactatgtgattttattagcaatatactactaagtctcaatcaattcaaatgattttatgtgtgggtacaagaatccaaatatatattttaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2009920 |
gattagaaactatgtgattttattagcaatatactactaagtctcaatcaattcaaatgattttatgtgtgggtacaagaatccaaatatatattttaca |
2010019 |
T |
|
| Q |
101 |
ccataaatttcatataagagaaattgaatgagtcgtgaatatattata |
148 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2010020 |
ccataactttcttataagagaaattgaatgagtcgtgaatatattata |
2010067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 2010349 - 2010454
Alignment:
| Q |
147 |
tatgatttttctaatgtttccttatgcatatatgaaagatcgaactttacattaaatggttaagtcggtgtttggttcaccgtggtgtgaacgcaaccgt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2010349 |
tatgatttttctaatgtttccttatgcatatgtgaaagatcgaactttacacaaaatggttaagccggtgtttggttcacggtggtgtgaacgcaaccgt |
2010448 |
T |
|
| Q |
247 |
gtgttt |
252 |
Q |
| |
|
|||||| |
|
|
| T |
2010449 |
gtgttt |
2010454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University