View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5193_high_25 (Length: 251)

Name: NF5193_high_25
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5193_high_25
NF5193_high_25
[»] chr1 (1 HSPs)
chr1 (1-238)||(29051641-29051878)
[»] chr8 (7 HSPs)
chr8 (1-146)||(1354746-1354891)
chr8 (1-186)||(1344672-1344858)
chr8 (170-238)||(1339197-1339265)
chr8 (72-132)||(1353604-1353664)
chr8 (1-58)||(10043380-10043437)
chr8 (144-228)||(1353758-1353844)
chr8 (208-238)||(1344870-1344900)
[»] chr3 (1 HSPs)
chr3 (1-73)||(24618734-24618806)
[»] chr7 (2 HSPs)
chr7 (170-238)||(13591359-13591427)
chr7 (1-42)||(13590877-13590918)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29051878 - 29051641
Alignment:
Q  1 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttaaattttgggtgtcctttcaatcttatatatgctgccattcatgataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||    
T  29051878 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttagattttgggtgtcctttcaatcttatatatgctggcgttcatgataa 29051779  T
Q  101 catatagttataaattgaatcggtataagaaattgttattagaaactaaagcaattcatgtttctgtttgaaactgaataagctttcgatcttctctact 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29051778 catatagttataaattgaatcggtatcagaaattgttattagaaactaaagcaattcatgtttctgtttgaaactgaataagctttcgatcttctctact 29051679  T
Q  201 gcatagcttttaagctgatggatcaccaatggctttct 238  Q
     |||||||||||||||||||||||||||||||||||||    
T  29051678 acatagcttttaagctgatggatcaccaatggctttct 29051641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 1354891 - 1354746
Alignment:
Q  1 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttaaattttgggtgtcctttcaatcttatatatgctgccattcatgataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  1354891 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaactgctttaaatttagggtttcctttcaatcttatatatgctggcattcatgataa 1354792  T
Q  101 catatagttataaattgaatcggtataagaaattgttattagaaac 146  Q
    |||||||||| ||||||||||||||| ||||   ||||||||||||    
T  1354791 catatagttacaaattgaatcggtatcagaagcggttattagaaac 1354746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 1344672 - 1344858
Alignment:
Q  1 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttaaattttgggtgtcctttcaatcttatatatgctgccattcatgataa 100  Q
    ||||||||||||||||||||||||||||||  ||||  ||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  1344672 tgttatgttaatttctctaaggaccagattagtgaaggcatgaaactgctttaaatttagggtttcctttcaatcttatatatgctggcattcatgataa 1344771  T
Q  101 catatagttataaattgaatcggtataagaaattgttattagaaactaaagcaattcatgtt--tctgtttgaaactgaataagcttt 186  Q
    ||||||| ||||||||||||| |||| |||||  ||||| ||||| |||||| ||||| |||  || ||| |||||||||||||||||    
T  1344772 catatag-tataaattgaatcagtatcagaaaaggttatcagaaagtaaagctattcaggtttgtcagttagaaactgaataagcttt 1344858  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 1339197 - 1339265
Alignment:
Q  170 gaaactgaataagctttcgatcttctctactgcatagcttttaagctgatggatcaccaatggctttct 238  Q
    |||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1339197 gaaaatgaatcagcttttgatcttctctactgcatagctttcaagctgatggatcaccaatggctttct 1339265  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 1353604 - 1353664
Alignment:
Q  72 aatcttatatatgctgccattcatgataacatatagttataaattgaatcggtataagaaa 132  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  1353604 aatcttgtatatgctgcccttcatgataacatatagttataaattgaatcggtatcagaaa 1353664  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10043437 - 10043380
Alignment:
Q  1 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttaaattt 58  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  10043437 tgttatgttaatttctctaaggaccagattgataaaataatgaaactgctttaaattt 10043380  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 1353758 - 1353844
Alignment:
Q  144 aactaaagcaattcatgttt--ctgtttgaaactgaataagctttcgatcttctctactgcatagcttttaagctgatggatcacca 228  Q
    ||||||||| ||||||||||  |||||  |||||||||||||||| ||||||| |||||| ||||| ||||||| || |||||||||    
T  1353758 aactaaagctattcatgtttgtctgttataaactgaataagcttttgatcttcactactgtatagcatttaagcggacggatcacca 1353844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 1344870 - 1344900
Alignment:
Q  208 ttttaagctgatggatcaccaatggctttct 238  Q
    |||||||||||||||||||||||||||||||    
T  1344870 ttttaagctgatggatcaccaatggctttct 1344900  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24618734 - 24618806
Alignment:
Q  1 tgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttaaattttgggtgtcctttcaa 73  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||| ||||    
T  24618734 tgttatgttaatttctctaaggactagattgatgaaatcatgaaactgctttagatttagggtgtcctctcaa 24618806  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 13591359 - 13591427
Alignment:
Q  170 gaaactgaataagctttcgatcttctctactgcatagcttttaagctgatggatcaccaatggctttct 238  Q
    |||| ||||| | |||| ||| |||||||||||||||| || ||||||||| |||||||||||||||||    
T  13591359 gaaaatgaatcaacttttgatgttctctactgcatagcattcaagctgatgaatcaccaatggctttct 13591427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13590877 - 13590918
Alignment:
Q  1 tgttatgttaatttctctaaggaccagattgatgaaatcatg 42  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  13590877 tgttatgctaatttctctaaggaccagattgacgaaatcatg 13590918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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