View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_high_31 (Length: 237)
Name: NF5193_high_31
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 3002206 - 3002310
Alignment:
| Q |
116 |
gaaacacgtaaaaataaaagacacttgtgcaaactctcgggtaccttgctagtaacaaacctttaaacatgaatctggacaatcgcccatttgaactgtg |
215 |
Q |
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| T |
3002206 |
gaaacacgtaaaaataaaagacacttgtgcaaactctcgggtaccttgctagtaacaaacccttaaacatggatctggacaatcgcccatctgaactgtg |
3002305 |
T |
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| Q |
216 |
ctaag |
220 |
Q |
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||||| |
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| T |
3002306 |
ctaag |
3002310 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3002091 - 3002140
Alignment:
| Q |
1 |
ttatcttttaacaaaaattagtgtagttatcaaattgaacaaaaacataa |
50 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
3002091 |
ttatcttttaacaaaaattagtgtatttaccaaattgaacaaaaacataa |
3002140 |
T |
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