View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_high_5 (Length: 490)
Name: NF5193_high_5
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 8101425 - 8101243
Alignment:
| Q |
21 |
ttgttattttaatgtcattggaacggtgattgaaaaccaccgtgttttgctcattattattct-----------gtatacaattcagtatcatatttttg |
109 |
Q |
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| T |
8101425 |
ttgttattttaatgtcattggaacggtgattgaaaaccaccgtgttttgctcattattactctttttcgctgatgtatacaattcagtatcatatttttg |
8101326 |
T |
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| Q |
110 |
cattttttggtatcatgctgctttcgtttctggatggtttatatactatattcaagtaattttctgcacgctttttcctactt |
192 |
Q |
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| T |
8101325 |
cattttttggtttcatgctgctttcgtttctggatggtttatatactagattcaagtgattttctgcacgctttttcctactt |
8101243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 404
Target Start/End: Complemental strand, 8101172 - 8100966
Alignment:
| Q |
199 |
caagaatttttccatcgacgctaatgagactgcaaaatagttcatagcagattggaaagatcacattagc--------------gtaatagtactggttg |
284 |
Q |
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| T |
8101172 |
caagaatttttccatcgatgctaattagactgcaaaatagttcatagtagattggaaagatcacattagccttgttaaactatagtaatagtactggttg |
8101073 |
T |
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| Q |
285 |
gaattgagaaagaatacctcaggatctgatgcattgtgtgtcaggctgtcagctaatgccaccagaccaagatattccacaatcgatgttgtaaaatcaa |
384 |
Q |
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| T |
8101072 |
gaattgggaaagaatacctcaggatctgatgcattg----------tgtcagctaatgccaccagaccatgatattccacaatcgaagttgtaaaatcaa |
8100983 |
T |
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| Q |
385 |
caatcgatgttgtaaaatga |
404 |
Q |
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| T |
8100982 |
caat---tgttgtaaaatga |
8100966 |
T |
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