View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_high_8 (Length: 427)
Name: NF5193_high_8
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 282 - 409
Target Start/End: Complemental strand, 1897696 - 1897569
Alignment:
| Q |
282 |
tttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtcaatcatttccattttctctcattttgcataata |
381 |
Q |
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| T |
1897696 |
tttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtcaatcatttccattttctctcattttgcataata |
1897597 |
T |
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| Q |
382 |
ttaatcctaccctacttaccacgaaaat |
409 |
Q |
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| T |
1897596 |
ttaatcctaccctacttaccactaaaat |
1897569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 144 - 290
Target Start/End: Complemental strand, 1898013 - 1897869
Alignment:
| Q |
144 |
gaattatacattctagtaaatactatgtagcactgatacttcatattgaagacgtggtgttcagtgtccaacatgtatcgatgtctggcacgtgttggtg |
243 |
Q |
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| T |
1898013 |
gaattatacattctagtaaatactatgtagcactgatacttcatattgaaaacgtg---ttcagtgtccaacatgtatcgatgtctggcacgtgctggtg |
1897917 |
T |
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| Q |
244 |
tcggacatagacatgcatgttaaattcaa-cctttccattttctcaaa |
290 |
Q |
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| T |
1897916 |
tcggacatagacatgcatgttaaattcaatcatttccattttctcaaa |
1897869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 1898150 - 1898043
Alignment:
| Q |
7 |
gtgagatgaataaaggaactgaaacttttcagtactaaaattttgatgatcccattaaataacaagtaatgaagaaatatttacttgtaaaggatttgga |
106 |
Q |
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| T |
1898150 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatcccattaaataacaagaaatgaagaaatatttacttgtaaaggatttgga |
1898051 |
T |
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| Q |
107 |
ttctatgg |
114 |
Q |
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|||||||| |
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| T |
1898050 |
ttctatgg |
1898043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 351
Target Start/End: Complemental strand, 1903344 - 1903146
Alignment:
| Q |
151 |
acattctagtaaatactatgtagcactgatacttcatattgaagacgtggtgttcagtgtccaacatgtatcgatgtctggcacgtgttggtgtcggaca |
250 |
Q |
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| T |
1903344 |
acattctagtaaatactatgcagcaccgatacttcacattgaaggcgtg---ttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagaca |
1903248 |
T |
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| Q |
251 |
tagacatgcatgttaaattcaaccttt-ccattttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtca |
349 |
Q |
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| T |
1903247 |
tagacatgcatgttacatccaatcttttccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttatatatggtgttcgtgactgtgtca |
1903148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 351
Target Start/End: Complemental strand, 1907577 - 1907379
Alignment:
| Q |
151 |
acattctagtaaatactatgtagcactgatacttcatattgaagacgtggtgttcagtgtccaacatgtatcgatgtctggcacgtgttggtgtcggaca |
250 |
Q |
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|||||||||||||||||||| ||||| ||||||||| ||||||| |||| |||||||| ||||| | || ||| ||||||||| ||||||| |||| |
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| T |
1907577 |
acattctagtaaatactatgcagcaccgatacttcacattgaaggcgtg---ttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagaca |
1907481 |
T |
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| Q |
251 |
tagacatgcatgttaaattcaaccttt-ccattttctcaaatgactattcgtgtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtca |
349 |
Q |
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| T |
1907480 |
tagacatgcatgttacatccaatcttttccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttatatatggtgttcgtgactgtgtca |
1907381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 1903450 - 1903369
Alignment:
| Q |
7 |
gtgagatgaataaaggaactgaaacttttcagtactaaaattttgatgatcccattaaataacaagtaatgaagaaatattt |
88 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
1903450 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatattt |
1903369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 1907683 - 1907602
Alignment:
| Q |
7 |
gtgagatgaataaaggaactgaaacttttcagtactaaaattttgatgatcccattaaataacaagtaatgaagaaatattt |
88 |
Q |
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| T |
1907683 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatattt |
1907602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 1880652 - 1880601
Alignment:
| Q |
62 |
taaataacaagtaatgaagaaatatttacttgtaaaggatttggattctatg |
113 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| | ||||||||| |
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| T |
1880652 |
taaataaaaagaaatgaagaaatatttacttgtaaaggatattgattctatg |
1880601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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