View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_1 (Length: 708)
Name: NF5193_low_1
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 697
Target Start/End: Original strand, 42062752 - 42063439
Alignment:
| Q |
10 |
catcatcataccaatctgatcagctaagtaatgaacgtaactcagccttccgctggaagcatcccaactgaaatgaatacgaaggatgagggggagggtg |
109 |
Q |
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| T |
42062752 |
catcatcataccaatctgatcagctaagtaatgaacgtaactcagccttccgctggaagcatcccaactgaaatgaatacgaaagatgagggggagggtg |
42062851 |
T |
|
| Q |
110 |
agttacttcacattaatgggaaacctatcaagggaaattttagactttgaaccaaaagaacttcgcattgcactctttcttcactttatcctcttattgc |
209 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
42062852 |
agttgcttcacaataatgggaaacctatcaagggaaattttagactttgaaccaaaagaactttgccttgcactctttcttcactttatcctcttattgc |
42062951 |
T |
|
| Q |
210 |
tgcaaagatccctctccagtgtcaactatcactgagatatggagaatcagtactagttatgtgatccattacacaaactcattattgccaaaataaacac |
309 |
Q |
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| T |
42062952 |
tacaaagatccctctccagtgtcaactatcactgagatatggagaatcagtactagttatgtgatccattacacaaactcattattgccaaaataaacac |
42063051 |
T |
|
| Q |
310 |
gagcacaacacatagattaactggcttagcttgaggatctacagctttgacgctgcaccgttgttcaagatccattgcaactccccttcaggtgaaacca |
409 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
42063052 |
gagcacaacacatagattaactggcttagcttcaggatctacagctttgacgcagcacctttgtccaagaaccatttcaactccccttcaggtgaaacca |
42063151 |
T |
|
| Q |
410 |
atgcagcaggaagcttttcagatgtttcagatccgcgtagtgcagagtgaactgcatccgctttaccggtaccagtcaccacaagagcaatgtaagcaga |
509 |
Q |
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| T |
42063152 |
atgcagcaggaagcttttcagatgtttcagatccgcgtagtgcagagtgaactgcatccgctttgccggtaccagtcaccacaagagcaatgtaagcaga |
42063251 |
T |
|
| Q |
510 |
ggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagaggg |
609 |
Q |
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| T |
42063252 |
ggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtaacccattttttattctcatggacaagaggg |
42063351 |
T |
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| Q |
610 |
tgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatgatg |
697 |
Q |
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| T |
42063352 |
tgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatgatg |
42063439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 513 - 694
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
513 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
612 |
Q |
| |
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||||||||| ||||| || || || |||||||||| ||||||||||| ||||| | | | || |||||||| | || ||| |||| ||||| ||| |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
|
| Q |
613 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
694 |
Q |
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|||||||| | ||| || ||||| ||||| |||||||| || || | |||||||||||||||||| |||||| ||| ||||| |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
|
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