View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_14 (Length: 334)
Name: NF5193_low_14
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 60 - 327
Target Start/End: Original strand, 20072018 - 20072283
Alignment:
| Q |
60 |
atgaactactgcaattttcgattgaagaagaagatatagtggtagatgtgttatagggtagacaagtagaggaattaacaattagttgcgtaatacaact |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||| ||| ||||| |
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| T |
20072018 |
atgaactactgcaattttcgattgaagaagaagatatagtggtagatgtgttgtagggtagacaagtagcgcaataaacaattagttgcataa--caact |
20072115 |
T |
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| Q |
160 |
aattgattatctcataactactgtaacttttttgacagttagtttgttatagctgttaaccatagttaggtagttaatcatagtttagttagagagttga |
259 |
Q |
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|||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20072116 |
aattgattatctcataactactgtaactttattaacagtttgtttgttataggtgttaaccatagttaggtagttaatcatagtttagttcgagagttga |
20072215 |
T |
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| Q |
260 |
gtttctctctagatatatgcgataaacaactcattgtaaactcggattttgtgaacgaattcatctct |
327 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20072216 |
gtttctctcttgatttatgcgataaacaactcattgtaaactcggattttgtgaacgaattcttctct |
20072283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 60 - 327
Target Start/End: Original strand, 20086019 - 20086285
Alignment:
| Q |
60 |
atgaactactgcaattttcgattgaagaagaagatatagtggtagatgtgttatagggtagacaagtagaggaattaacaattagttgcgtaatacaact |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||| || | |||| |
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| T |
20086019 |
atgaactactgcaattttcgattgaagaagaagatatagtggtagatgtgttgtagggtagacaagtagcgcaataaacaattagttgcata--aaaact |
20086116 |
T |
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| Q |
160 |
aattgattatctcataactactgtaacttttttgacagttagtttgttatagctgttaaccatagttaggtagttaatcatagtttagttagagagttga |
259 |
Q |
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| T |
20086117 |
aattgattatcttataactactgtaac-tttttaatagttatcttgttataactgttaaccatagttaggtagttaatcatagtttagttagacagttga |
20086215 |
T |
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| Q |
260 |
gtttctctctagatatat--gcgataaacaactcattgtaaactcggattttgtgaacgaattcatctct |
327 |
Q |
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| T |
20086216 |
gtttctctttatatatatccgcagtaaaaaactcattgtaaactcagattttgtgaatgaattcctctct |
20086285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 20069577 - 20069782
Alignment:
| Q |
60 |
atgaactactgcaattttcgattgaagaagaagatatagtggtagatgtgttatagggtagacaagtagaggaattaacaattagttgcgtaatacaact |
159 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||| ||| |||||||| |||| ||| ||| | |
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| T |
20069577 |
atgaactaatgcaattttcgattgaagaagaagatatagtggtagatgtattaaagggtagataactagagaaataaacaattacttgcataa--caagt |
20069674 |
T |
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| Q |
160 |
aattgattatctcataactactgtaacttttttgacagttagtttgttatagctgttaaccatagttaggtagttaatcatagtttagttagagagttga |
259 |
Q |
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||| | |||||||||||||||| | ||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20069675 |
aatgggttatctcataactactatgactcttttaatagttagtttgttatagctgctaaccatagttaggtagttaatcatagtttaattagagagttga |
20069774 |
T |
|
| Q |
260 |
gtttctct |
267 |
Q |
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|||||||| |
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|
| T |
20069775 |
gtttctct |
20069782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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