View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_19 (Length: 293)
Name: NF5193_low_19
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 8101608 - 8101892
Alignment:
| Q |
1 |
ccagctccaccttggtacatctttgcaatgattgggttgcagattgtctcaagctccttcatcttgtcttcaaactcatcggcttccgcaagctggttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
8101608 |
ccagctccaccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatcggcttcagcaagctggtttg |
8101707 |
T |
|
| Q |
101 |
catcaagccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctccagaaagctttgaactgatcttctcgtctttaatggtgtttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8101708 |
catcaagccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctcctgaaagctttgaactgatcttctcgtctttaatggtgtttct |
8101807 |
T |
|
| Q |
201 |
catgttgtatgcatagttctccaaggagttcttggcctcaaccttcttcttgtgctcctcatcttcactcttgtatttctctgct |
285 |
Q |
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| T |
8101808 |
catgttgtatgcatagttctccaaggagttctttgcctcaaccttcttcttgtgctcctcatcttcactcttgtatttctctgct |
8101892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 8018636 - 8018356
Alignment:
| Q |
5 |
ctccaccttggtacatctttgcaatgattgggttgcagattgtctcaagctccttcatcttgtcttcaaactcatcggcttccgcaagctggttggcatc |
104 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||| | ||||||| ||||||||||| |||||||||||||| || || || | |||||| || |
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| T |
8018636 |
ctccaccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctctgccaactggttactgtc |
8018537 |
T |
|
| Q |
105 |
aagccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctccagaaagctttgaactgatcttctcgtctttaatggtgtttctcatg |
204 |
Q |
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| T |
8018536 |
caaccactgaattgcagcgtcaattgcatcatcaatcttctttttgtcctcaggtgaaagctttgaaccaatcttctcgtctttaattgtgttcctcatg |
8018437 |
T |
|
| Q |
205 |
ttgtatgcatagttctccaaggagttcttggcctcaaccttcttcttgtgctcctcatcttcactcttgtatttctctgct |
285 |
Q |
| |
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||||| || ||||| ||||| | ||||| || ||||||||||| ||||| ||||| |||||| ||||||||| |||||| |
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| T |
8018436 |
ttgtaagcgtagttttccaaagcattctttgcatcaaccttctttttgtgttcctcgtcttcagccttgtatttttctgct |
8018356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 39984593 - 39984870
Alignment:
| Q |
7 |
ccaccttggtacatctttgcaatgattgggttgcagattgtctcaagctccttcatcttgtcttcaaactcatcggcttccgcaagctggttggcatcaa |
106 |
Q |
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||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| ||||||||||| || || ||||||||||||||||| | |
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| T |
39984593 |
ccaccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcagcctctgcaagctggttggcatcta |
39984692 |
T |
|
| Q |
107 |
gccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctccagaaagctttgaactgatcttctcgtctttaatggtgtttctcatgtt |
206 |
Q |
| |
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|||| || || || ||||||| | ||||| |||| ||| ||||| | | ||||||| || || || || ||||||||||| |||||||| |
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| T |
39984693 |
gccactggatagcagcctcaatggtgtcctcgatcttctttttgtcatccgaatcaagctttcctgcaattttttcatccttaatggtgttcctcatgtt |
39984792 |
T |
|
| Q |
207 |
gtatgcatagttctccaaggagttcttggcctcaaccttcttcttgtgctcctcatcttcactcttgtatttctctgc |
284 |
Q |
| |
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|||||||||||| ||||| | ||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||| |
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| T |
39984793 |
gtatgcatagttttccaatgcattcttggcctcgaccttcttcttatgctcttcatcttccgacttgtacttctctgc |
39984870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 23588953 - 23588701
Alignment:
| Q |
8 |
caccttggtacatctttgcaatgattgggttgcagattgtctcaagctccttcatcttgtcttcaaactcatcggcttccgcaagctggttggcatcaag |
107 |
Q |
| |
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||||||| |||||| |||||||||| |||||||| || ||| ||||||||||||||||| ||||| ||||| || || |||| || || |||| | |
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| T |
23588953 |
caccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23588854 |
T |
|
| Q |
108 |
ccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctccagaaagctttgaactgatcttctcgtctttaatggtgtttctcatgttg |
207 |
Q |
| |
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||||||||| || |||||||| ||||| ||||| | |||||| || | |||| | ||| ||| ||||| |||||||| || ||||| ||||||||| |
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| T |
23588853 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagcagacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23588754 |
T |
|
| Q |
208 |
tatgcatagttctccaaggagttcttggcctcaaccttcttcttgtgctcctc |
260 |
Q |
| |
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|| ||||||||||| | | ||||||||||| || ||||| ||||||||||| |
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| T |
23588753 |
taggcatagttctcaagtgcattcttggcctccactttctttttgtgctcctc |
23588701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 23597805 - 23597550
Alignment:
| Q |
8 |
caccttggtacatctttgcaatgattgggttgcagattgtctcaagctccttcatcttgtcttcaaactcatcggcttccgcaagctggttggcatcaag |
107 |
Q |
| |
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||||||| |||||| |||||||||| |||||||| || ||| ||||||||||||||||| ||||| ||||| || || |||| || || |||| | |
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| T |
23597805 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatccaa |
23597706 |
T |
|
| Q |
108 |
ccattgaatggctccctcaattgcatcctcaatctgcttcttgtctcctccagaaagctttgaactgatcttctcgtctttaatggtgtttctcatgttg |
207 |
Q |
| |
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||||||||| || |||||||| ||||| ||||| | |||||| || | | || | ||| ||| ||||| |||||||| || ||||| ||||||||| |
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| T |
23597705 |
ccattgaatagccccctcaatagcatcttcaattttcttcttatcatcagccgacaacttcgaagcaatcttgtcgtctttgattgtgttcctcatgttg |
23597606 |
T |
|
| Q |
208 |
tatgcatagttctccaaggagttcttggcctcaaccttcttcttgtgctcctcatc |
263 |
Q |
| |
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|| ||||||||||| | | || |||||||| |||||| | |||||||||||||| |
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| T |
23597605 |
taggcatagttctcaagcgcatttttggcctccaccttccttttgtgctcctcatc |
23597550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 17706900 - 17706791
Alignment:
| Q |
1 |
ccagctccaccttggtacatctttgcaatgattgggttgcagattgtctcaagctccttcatcttgtcttcaaactcatcggcttccgcaagctggttgg |
100 |
Q |
| |
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||||| ||||||||||||||||| |||||||| |||||||||| || | |||||||||||||| ||||||||||| || || |||||||| |||| |
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| T |
17706900 |
ccagcaccaccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgcaagctgattgg |
17706801 |
T |
|
| Q |
101 |
catcaagcca |
110 |
Q |
| |
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| || ||||| |
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| T |
17706800 |
cgtctagcca |
17706791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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