View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_25 (Length: 257)
Name: NF5193_low_25
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 47182772 - 47182997
Alignment:
| Q |
17 |
aagaagtgctctaatattaccatcatcacgcaacgatgctttaaccctcttcatcatgtggttataaagcactttacccctttcccattcacttatattg |
116 |
Q |
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| T |
47182772 |
aagaagtgctctaatattaccatcatcacgcaacgatgctttaaccctcttcatcatgtggttataaagcactttacccctttcccattcacttatattg |
47182871 |
T |
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| Q |
117 |
gtgccaccaattgcacatgggaccaaccccaccaaaccaagtcccgagnnnnnnnccagcacatgtttcgcaaatgccatacctggtccaaccccatttg |
216 |
Q |
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| T |
47182872 |
gtgccaccaattgcacatgggaccaaccccaccaaaccaagtcccgagtttttttccagcacatgtttcgcaaatgccatacctggtccaaccccatttg |
47182971 |
T |
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| Q |
217 |
tctttagcgtatctatgtcttcatga |
242 |
Q |
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| T |
47182972 |
tctttagcgtatctatgtcttcatga |
47182997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 10567685 - 10567892
Alignment:
| Q |
35 |
accatcatcacgcaacgatgctttaaccctcttcatcatgtggttataaagcactttacccctttcccattcacttatattggtgccaccaattgcacat |
134 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
10567685 |
accatcatcaagcaacgatgctttaaccctcttcatcatgttcttataaagcacttttcccctttcccattcactaatattggtaccacccgttgcacat |
10567784 |
T |
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| Q |
135 |
gggaccaaccccaccaaaccaagtcccgagnnnnnnnccagcacatgtttcgcaaatgccatacctggtccaaccccatttgtctttagcgtatctatgt |
234 |
Q |
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| T |
10567785 |
ggaaccaaccctaccaaaccaaatcccaagtttttttccaacacatgatttgcaaacaccattcctggtccaatcccatttgtttttagagtatctatgt |
10567884 |
T |
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| Q |
235 |
cttcatga |
242 |
Q |
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|||||||| |
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| T |
10567885 |
cttcatga |
10567892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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