View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_26 (Length: 255)
Name: NF5193_low_26
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 29052079 - 29051885
Alignment:
| Q |
56 |
tataagatgctgctaggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttatgattgtgaagtcagtgt |
155 |
Q |
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| T |
29052079 |
tataagatgctgctaggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttgtgattgtgaagtcagtgt |
29051980 |
T |
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| Q |
156 |
gttactatttggtttctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcataatcggtagtccctttgcttct |
250 |
Q |
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| T |
29051979 |
gttactatttggtttctcaatgttagaaatgctcaaatttgtgaagttttctatatgtaatttgaaaattcataattagtagtcactttgtttct |
29051885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29052189 - 29052148
Alignment:
| Q |
17 |
attattagcattaatcatctttggctttgtccagtgtgttat |
58 |
Q |
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| T |
29052189 |
attattagcattaatcatctttggcttcgcccagtgtgttat |
29052148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 1344486 - 1344646
Alignment:
| Q |
71 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttatgattgtgaagtcagtgtgttactatttggttt |
170 |
Q |
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| T |
1344486 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttactatttggttt |
1344585 |
T |
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| Q |
171 |
ctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcataat |
231 |
Q |
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| T |
1344586 |
ctcaatgttaaaactaatcaaatttttgaagtcctctagatgtaatttgaaaattcataat |
1344646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 1355076 - 1354917
Alignment:
| Q |
71 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttatgattgtgaagtcagtgtgttactatttggttt |
170 |
Q |
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| T |
1355076 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaagaatttccttgtgattgtgaagtcaatgtgttactatttagttt |
1354977 |
T |
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| Q |
171 |
ctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcataat |
231 |
Q |
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| T |
1354976 |
cttaatgttag-aatgctcaaatttgtgaagttttttagatgtaatttgaaaattcataat |
1354917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 1350880 - 1350970
Alignment:
| Q |
141 |
ttgtgaagtcagtgtgttactatttggtttctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcataat |
231 |
Q |
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| T |
1350880 |
ttgtgaagttggtgtattactgtttggtttcttaatgttaaaaatgctcaagtttgtcaagttttattgataaaatttgaaaattcataat |
1350970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 1361403 - 1361492
Alignment:
| Q |
141 |
ttgtgaagtcagtgtgttactatttggtttctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcataat |
231 |
Q |
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| T |
1361403 |
ttgtgaagtc-gtgtattactgtttggttactcaatgttaaaaatgctcaagtttgtcaagttttatagataaaatttgaaaatttataat |
1361492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 13590644 - 13590728
Alignment:
| Q |
144 |
tgaagtcagtgtgttactatttggtttctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcat |
228 |
Q |
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|||| |||||||||||||||||||||||||| || || |||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
13590644 |
tgaattcagtgtgttactatttggtttctcagtggtaaaaatgctcaaatttgtatagttttatagatgtaatttgaaaattcat |
13590728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 13590587 - 13590630
Alignment:
| Q |
77 |
gtaagcatttttaaattttgaattgcttcatcactatttcaact |
120 |
Q |
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| T |
13590587 |
gtaaacatttttaaattttgaattgtttcatcactatttcaact |
13590630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 34265403 - 34265359
Alignment:
| Q |
82 |
catttttaaattttgaattgcttcatcactatttcaactatgcaa |
126 |
Q |
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| T |
34265403 |
cattttaaaattttgaattgcttcatccctatttcaactatgcaa |
34265359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 24618643 - 24618727
Alignment:
| Q |
166 |
ggtttctcaatgttagaaatgctcaaatttgtgaagttttctagatgtaatttgaaaattcataatcggtagtccctttgcttct |
250 |
Q |
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||||||||||||||| ||| ||||||||| |||||||||||| |||||| ||||||||||||| |||||| ||||| |||| |
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| T |
24618643 |
ggtttctcaatgttaataattctcaaatttacaaagttttctagaggtaattagaaaattcataattagtagtcactttgtttct |
24618727 |
T |
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