View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_3 (Length: 568)
Name: NF5193_low_3
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 123 - 557
Target Start/End: Complemental strand, 10347638 - 10347203
Alignment:
| Q |
123 |
aacaatttgaatcaaatgccgcattttatcaatattttttcaacaatgtgttttcaaaccaaatcatacactttata-aacatgaaaatgggtataaact |
221 |
Q |
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| T |
10347638 |
aacaatttgaataaaatgccgcattttataaatacttttcgaacaatgaattttcaaaccaaattatacactttatataacacgtaaatgggtataaact |
10347539 |
T |
|
| Q |
222 |
ataaacattgatttttcatgacaatatcatttacaacaatacaaaatataaagtatagaaaataaacatataagactctataagcgaaaatcaagctaac |
321 |
Q |
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| T |
10347538 |
ataaacattgatttttcattacaatatcatttgcatcaatagaaactataaagtatagaaaataaacatataagattctataagcgaaaaccaagctaac |
10347439 |
T |
|
| Q |
322 |
caggaaccccgaattgagatgacatggtgcgagacccaccaatggcatcaaactcaactgcctccggttgataataaagtcacctcctctctatgtcttt |
421 |
Q |
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| T |
10347438 |
cggataccccgaattgagatgacatggtgcgagacccaccaatggcattaaaatcatctgcctccatttgataacaaagttacctcatctctatgtcttt |
10347339 |
T |
|
| Q |
422 |
agcattgtcttgaattccaccattaagactctaagaaattatggggcacccacgcctatattttttcagggtaaagtagatgttaacgatctaaatataa |
521 |
Q |
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| T |
10347338 |
agcgtcatcttgaattccacaactaagactctaagaaattatggggcacccacactcatattttcgtagggtaaagtagatgataacgatctaaatacac |
10347239 |
T |
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| Q |
522 |
tatatgtacaaaaatacagtataaattgtgatgatg |
557 |
Q |
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| T |
10347238 |
catatgtacaaaaatacagaataaaatgtgatgatg |
10347203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 333 - 518
Target Start/End: Complemental strand, 10345372 - 10345187
Alignment:
| Q |
333 |
aattgagatgacatggtgcgagacccaccaatggcatcaaactcaactgcctccggttgataataaagtcacctcctctctatgtctttagcattgtctt |
432 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||||| || |||||| | || |||| |
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| T |
10345372 |
aattgagatgaaatggtgcgagacccaccaatggcatcaaattcaactgcctttggttgataataaagttatctcctcgttacatctttacctttatctt |
10345273 |
T |
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| Q |
433 |
gaattccaccattaagactctaagaaattatggggcacccacgcctatattttttcagggtaaagtagatgttaacgatctaaata |
518 |
Q |
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| T |
10345272 |
gaattccacaactaagactctaagaaattaggggacatccaggcctatatttcggcaaggtaaaatagatggtcacgatcaaaata |
10345187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 10353520 - 10353592
Alignment:
| Q |
19 |
gttgatgggttcttttatttttaaatgttcaatgtagcgtatgtgtattgttatatgtatcagtttttataac |
91 |
Q |
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| T |
10353520 |
gttgatgggttcttttatttttaaatgttcaatgtagtatatgtgtattgtcatatgcatcagttttcataac |
10353592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 11824875 - 11824941
Alignment:
| Q |
19 |
gttgatgggttcttttatttttaaatgttcaatgtagcgtatgtgtattgttatatgtatcagtttt |
85 |
Q |
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| T |
11824875 |
gttgatgggttcttgtatttttaaatgttcattgtagtgcatgtgtattgtcatatgtatcattttt |
11824941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 10345436 - 10345376
Alignment:
| Q |
243 |
caatatcatttacaacaatacaaaatataaagtatagaaaataaacatataagactctataa |
304 |
Q |
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| T |
10345436 |
caatatcatt-acaacaatacaaattataatgtatagaaaataaacatttaagactctataa |
10345376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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