View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5193_low_30 (Length: 245)

Name: NF5193_low_30
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5193_low_30
NF5193_low_30
[»] chr1 (11 HSPs)
chr1 (1-238)||(27777359-27777593)
chr1 (1-238)||(27782368-27782602)
chr1 (72-220)||(27780947-27781092)
chr1 (113-200)||(38227213-38227300)
chr1 (138-206)||(38227135-38227203)
chr1 (138-205)||(38226992-38227059)
chr1 (138-206)||(38227063-38227131)
chr1 (167-220)||(27781156-27781209)
chr1 (169-220)||(27781080-27781131)
chr1 (137-206)||(17663549-17663618)
chr1 (167-220)||(27781195-27781248)
[»] chr7 (1 HSPs)
chr7 (76-205)||(440929-441055)
[»] chr4 (3 HSPs)
chr4 (138-206)||(35250178-35250246)
chr4 (76-206)||(51220034-51220161)
chr4 (113-200)||(51220827-51220911)
[»] chr8 (1 HSPs)
chr8 (76-136)||(44989777-44989837)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27777359 - 27777593
Alignment:
Q  1 gttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaagattgcaaggaacctgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  27777359 gttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgaaaggaacctactgc 27777458  T
Q  101 ctctaatcaaagtattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagt 200  Q
    ||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27777459 ctctaatcaaagtattgaagagaagaagatga---atgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 27777555  T
Q  201 aatgatgtgatgaattttgagcttccaagtgatgatgt 238  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27777556 aatgatgtgatgaattttgagcttacaagtgatgatgt 27777593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27782602 - 27782368
Alignment:
Q  1 gttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcaaggcggtttcgagacaccacaagattgcaaggaacctgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  27782602 gttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgtaaggaaccttctgc 27782503  T
Q  101 ctctaatcaaagtattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagt 200  Q
    |||||||||||||||||| |||||||||||||   | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27782502 ctctaatcaaagtattgatgagaagaagatga---atgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 27782406  T
Q  201 aatgatgtgatgaattttgagcttccaagtgatgatgt 238  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27782405 aatgatgtgatgaattttgagctttcaagtgatgatgt 27782368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 27780947 - 27781092
Alignment:
Q  72 acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtga 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |   | |||||||||||| || ||||||||||||||||||    
T  27780947 acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatta---atgaaggtgaaacaaaattagggtcaaaagttgtga 27781043  T
Q  172 agaaatttgatttgaacgagcttccaagtaatgatgtgatgaattttga 220  Q
    |||| ||||||||| |||||||||||||| ||||| ||| |||||||||    
T  27781044 agaattttgatttggacgagcttccaagtgatgatatgaagaattttga 27781092  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 38227300 - 38227213
Alignment:
Q  113 tattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagt 200  Q
    ||||||||||||||||| ||   | ||||||||||| ||| ||||||||||||||||||||||  ||||||||||||||||| |||||    
T  38227300 tattgaagagaagaagacgattaatgaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagt 38227213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 38227203 - 38227135
Alignment:
Q  138 gaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagtaatgat 206  Q
    ||||||||||| ||| |||||||||||||||| |||||  ||||||||||||||||||||||| |||||    
T  38227203 gaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 38227059 - 38226992
Alignment:
Q  138 gaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagtaatga 205  Q
    ||||||||||| |||  ||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  38227059 gaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatga 38226992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 38227131 - 38227063
Alignment:
Q  138 gaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagtaatgat 206  Q
    ||||||||| | ||| |||||||||||| ||||||||| |||||||||||||| ||||||||| |||||    
T  38227131 gaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgat 38227063  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 27781156 - 27781209
Alignment:
Q  167 tgtgaagaaatttgatttgaacgagcttccaagtaatgatgtgatgaattttga 220  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||    
T  27781156 tgtgaagaattttgatttgaacaagcttccaagtgatgatgtgaagaattttga 27781209  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 27781080 - 27781131
Alignment:
Q  169 tgaagaaatttgatttgaacgagcttccaagtaatgatgtgatgaattttga 220  Q
    ||||||| |||||||||||||||||||||||| |||||| || |||||||||    
T  27781080 tgaagaattttgatttgaacgagcttccaagtgatgatgcgaagaattttga 27781131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 17663549 - 17663618
Alignment:
Q  137 cgaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagtaatgat 206  Q
    ||||| |||||| ||| ||||||||| |||||| | ||| ||||||||||| |||||||||||| |||||    
T  17663549 cgaagatgaaaccgaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgat 17663618  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 27781195 - 27781248
Alignment:
Q  167 tgtgaagaaatttgatttgaacgagcttccaagtaatgatgtgatgaattttga 220  Q
    ||||||||| |||||||||||||||  ||||| | ||||||||| |||||||||    
T  27781195 tgtgaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttga 27781248  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 441055 - 440929
Alignment:
Q  76 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtgaagaa 175  Q
    |||||||||||||||||||| || ||||||||||  ||||||||||||||| ||| || ||   |||||  || ||| ||||| ||||||||||||||||    
T  441055 cacaagattgcaaggaacctcctacctctaatcatggtattgaagagaagatgattaatga---aggtgttactgaattagggccaaaagttgtgaagaa 440959  T
Q  176 atttgatttgaacgagcttccaagtaatga 205  Q
     |||||||||||||||||||||||| ||||    
T  440958 ttttgatttgaacgagcttccaagtgatga 440929  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 35250246 - 35250178
Alignment:
Q  138 gaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagtaatgat 206  Q
    |||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  35250246 gaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgat 35250178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 51220161 - 51220034
Alignment:
Q  76 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtgaagaa 175  Q
    |||||||||||||||||| ||   |||||||| |   |||||||||||||||||| |||||   | ||||||| ||| ||||||||| |||||| | |||    
T  51220161 cacaagattgcaaggaacatgactcctctaataatgatattgaagagaagaagattaacga---aagtgaaactgaattagggtcaatagttgttatgaa 51220065  T
Q  176 atttgatttgaacgagcttccaagtaatgat 206  Q
     ||||||| ||| |||||||||||| |||||    
T  51220064 ttttgattcgaatgagcttccaagtgatgat 51220034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 51220911 - 51220827
Alignment:
Q  113 tattgaagagaagaagatgaacgacgaaggtgaaacagaactagggtcaaaagttgtgaagaaatttgatttgaacgagcttccaagt 200  Q
    |||||||||||||||||| |||||   | ||||||| ||| ||||||||| | |||| | ||| ||||| ||||||||||||||||||    
T  51220911 tattgaagagaagaagattaacga---aagtgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagt 51220827  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 44989837 - 44989777
Alignment:
Q  76 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaacga 136  Q
    |||||||||||||||||||||  | |||||||||   ||||||| |||||||||| |||||    
T  44989837 cacaagattgcaaggaacctgaaggctctaatcatgatattgaatagaagaagattaacga 44989777  T

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