View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_31 (Length: 244)
Name: NF5193_low_31
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 2009891 - 2009701
Alignment:
| Q |
49 |
ttatatgtgattcgagtaggacatccccaagatccatgtgctatcttatgtgttgacctcagatagtggatacttacttaacagtgcagtgattttagat |
148 |
Q |
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| T |
2009891 |
ttatatgtgattcgagtaggacatcccaaagatccatgtgctatcttatgtgttgaccccggataatggatacttacttaacagtgcagtgatcttagat |
2009792 |
T |
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| Q |
149 |
tccttaagtacatgtatc---gttaattaaggtgtaattttatatcccatcgtgccaccattgtaaatttgatcttcaacttgtaacctttg |
237 |
Q |
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| T |
2009791 |
tcctt-agtacatgtatcttgattaattaaggtgtaattttatatcccatcgtgccaccattgtaattttgatcttcaacttgtaacctttg |
2009701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2003924 - 2003820
Alignment:
| Q |
1 |
taatcatgtacagtataatctagtgaatctaacctctcatcccacaaattatatgtgattcgagtaggacatccccaagatccatgtgctatcttatgtg |
100 |
Q |
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| T |
2003924 |
taatcatgtacagtataatctagtgaatctaacctctcatgccacaaattatatgtgattcgagtaggacatccccaagatccatgtgctatcttatgtg |
2003825 |
T |
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| Q |
101 |
ttgac |
105 |
Q |
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||||| |
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| T |
2003824 |
ttgac |
2003820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 2003721 - 2003680
Alignment:
| Q |
187 |
atatcccatcgtgccaccattgtaaatttgatcttcaacttg |
228 |
Q |
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| T |
2003721 |
atatcccactgtgccaccattgtaaatttgatcttcaacttg |
2003680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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