View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_33 (Length: 240)
Name: NF5193_low_33
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 3716549 - 3716768
Alignment:
| Q |
19 |
cttagttctcctctgctcgtcaacaacctttttaattttaggaagaaaaaatatgtttctttattcgttttgtgttatggagcggttacattacttgttc |
118 |
Q |
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| T |
3716549 |
cttagttctcctctgctcgtcaacaacctttttatttttaggaagaaaaaatatgtttctttattcgtt--gtgttatggagcggttacattacttgttc |
3716646 |
T |
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| Q |
119 |
agctactctttcatgtctttgcgcttatttacttaatataaagttttttgattgtatcttgttctctgcaaccttaattttgtgtttaccttcggttaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3716647 |
agctactctttcatgtctttgcgcttatttacttaatataaagttttttgattgtatcttgttctctgcaaccttaattttgtgtttaccttcggttaga |
3716746 |
T |
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| Q |
219 |
aaattagtaatatacttaactt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
3716747 |
aaattagtaatatacttaactt |
3716768 |
T |
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