View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_36 (Length: 235)
Name: NF5193_low_36
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 43322937 - 43323147
Alignment:
| Q |
18 |
gatgatgatctggtctgggttgatttaatcactcaaataattgatgagattggtgttaaaggagagaattgtcatataggaatttacaaggaaaacatgc |
117 |
Q |
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| T |
43322937 |
gatgatgatctggtgtgggttgatttaatcactcaaataattgatgagattggtgttaaaggagagaattgtcatataggaatttacaaggaaaacatgc |
43323036 |
T |
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| Q |
118 |
ttccaattggaggaataaattag----------nnnnnnnctcttttaaacccaagtggtatatgacaatgggatttgtactttgtaaacaatatcattt |
207 |
Q |
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| T |
43323037 |
ttccaattggaggaataaattagtttttttttttttttttctcttttaaacccaagtggtatatgacaatgggatttgtactttgtaaacaatatcattt |
43323136 |
T |
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| Q |
208 |
tgtctatgaat |
218 |
Q |
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| T |
43323137 |
tgtttatgaat |
43323147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 41228119 - 41228180
Alignment:
| Q |
76 |
aaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaat |
137 |
Q |
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| T |
41228119 |
aaggagaatattgtcatatagcagtttacaaggaagaccttcttccaattggtggaataaat |
41228180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 42783431 - 42783495
Alignment:
| Q |
73 |
ttaaaggagagaattgtcatataggaatttacaaggaaaacatgcttccaattggaggaataaat |
137 |
Q |
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| T |
42783431 |
ttaaaggagaatattgtaatatagcagtttacaaggaagaccttcttccaattggtggaataaat |
42783495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 42446571 - 42446604
Alignment:
| Q |
102 |
tacaaggaaaacatgcttccaattggaggaataa |
135 |
Q |
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| T |
42446571 |
tacaaggaaaacattcttccaattggaggaataa |
42446604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 9593619 - 9593586
Alignment:
| Q |
102 |
tacaaggaaaacatgcttccaattggaggaataa |
135 |
Q |
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| T |
9593619 |
tacaaggaaaacattcttccaattggaggaataa |
9593586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 42449960 - 42450012
Alignment:
| Q |
30 |
gtctgggttgatttaatcactcaaataattgatgagattggtgttaaaggaga |
82 |
Q |
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| T |
42449960 |
gtctgggttgatttaaggactcaaatgattgagaagcttggtgttaaaggaga |
42450012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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