View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_5 (Length: 526)
Name: NF5193_low_5
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Complemental strand, 7810124 - 7809619
Alignment:
| Q |
17 |
cacagatattgttaaaatatataagcaattgtataaataaataa--------ctaataagattcatcaaagcaatattatttatttatcaaatgtgtggt |
108 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7810124 |
cacagatattgttaaaatatataagcaattctataaataaataaataaataactaataagattcatcaaagcaatattatttatttatcaaatgtgtggt |
7810025 |
T |
|
| Q |
109 |
ac-catacgacgcatctgaataaattgtaaatttatagtactgctgccaacttcatcatata--cctgtatctctttgatgttgacctcttaattatttt |
205 |
Q |
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| T |
7810024 |
actcatacgacgcatctgaataaattgtaaatttatagcactgctgccaacttcatcatatatacctgtatctctttgatgttgacctcttaattatttt |
7809925 |
T |
|
| Q |
206 |
tcctcttaatatactcagctcaaatgttttgacttaattttaaaaatgacaccnnnnnnngaaggagaaaatgacacctaaattaagtatgtacatataa |
305 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
7809924 |
tcctcttcatatactcagctcaaatgttttgacttaattttaaaaatgacacctttttttgaaggaaaaaatgacacctaaattaagtatgtacatataa |
7809825 |
T |
|
| Q |
306 |
ttcataaatacatgtgtagaaaaagctccatagcgataataatcaaataattgaaataatacatggagccatgtggtaatggggagaacaaaatgaattt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7809824 |
ttcataaatacatgtgtagaaaaagctccatagcgataataatcaaataattgaaacaatacatggagccatgtggtaatggggagaacaaaatgaattt |
7809725 |
T |
|
| Q |
406 |
tctttcccatttatatatcgacatgcatgatttgttgacatggttaggttcgg-gttctactatagattgtgtcttctcccttactcctcaaagcggtta |
504 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7809724 |
tctttcccatttatatatcgacatgcatgatctgttgacatggtttggtccggagttctactgtagattgtgtcttctcccttactcctcaaagcggtta |
7809625 |
T |
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| Q |
505 |
gtgatg |
510 |
Q |
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|||||| |
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| T |
7809624 |
gtgatg |
7809619 |
T |
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