View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5193_low_8 (Length: 441)
Name: NF5193_low_8
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 32731584 - 32731857
Alignment:
| Q |
157 |
tgcaagaactagctagcatcttctgttttagcaaggaaggaagattacagtacattacacgtacaccacagcatatctcgtattcttcgcaaataacaac |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32731584 |
tgcaagaactagctagcatcttctgttttagcaaggaaggaagattacagtacattacacgtacaccacagcatatctcgtattcttcgcaaataacaac |
32731683 |
T |
|
| Q |
257 |
gttggcaaacccataatcacacgtgaaactgctgtcaacaacgttaagctaacaacatgcaaacccttttaataccaacaacgtacctttctctctccct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32731684 |
gttggcaaacccataatcacacgtgaaactgctgtcaacaacgttaagctaacaacatgcaaacccttttaataccaacaacttacctttctctctccct |
32731783 |
T |
|
| Q |
357 |
cgccctctccctccttttgatcatacaatttcttcatcctttcaaccatcgccaccatcatcaccaccggttat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32731784 |
cgccctctccctccttttgatcatacaatttcttcatcctttcaaccatcgccaccatcatcaccaccggttat |
32731857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 32731454 - 32731521
Alignment:
| Q |
27 |
gtgtctattaccaaccctcctacctaataggaaaaaattaaagcgcgtgtaaataaaaaacgaccaaa |
94 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32731454 |
gtgtctattactaaccctcctacctaataggaaaaaattaaagcgcgtgtaaataaaaaacgaccaaa |
32731521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University