View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5193_low_9 (Length: 429)
Name: NF5193_low_9
Description: NF5193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5193_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 1747311 - 1747723
Alignment:
| Q |
1 |
taatctaaggagtgttgcaggtcaacctcttcaaggaagggaagtcatcgtagtcgtagctaacaactaggtcgtttttctggagagagtggtcaaagtt |
100 |
Q |
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| T |
1747311 |
taatctaaggagtgttgtaggtcaacctcttcaagggagggaagtcattgtagtcgtggctaacaactaggtcgtttttatggagagagtggtcaaagtt |
1747410 |
T |
|
| Q |
101 |
ggaacaagtgagaggggtaaacattgtaatcttaatctctttggacaaagctcgcaatcccttttcaggaaaagtggattggttggttaggttgagcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
1747411 |
ggaacaagtgagaggggtaaacattgtaatcttaatctctttggacaaagctcgcaatccctttgctggaaaagtggattggttggataggttgagcaat |
1747510 |
T |
|
| Q |
201 |
ttgaggtgcaatcggaaagtggagattaggaggagaagccggttgaggtggttgaggttaccgcggaagcgtgtgaggttaaggcaggcgatgttgggga |
300 |
Q |
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| T |
1747511 |
ttgaggtgcaatcggaaagtggagattaggaggagaagccggttgaggtggttgaggttaccgcggaagcgtgtgaggttaaggcaggcgatattgggga |
1747610 |
T |
|
| Q |
301 |
aacgctggaagagacgtgggaagtaaggtagggtttggtttgagattgaaagagagaatttgtgacagttggttagggagagtaactgttttgagacgag |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
1747611 |
aacgctggaagagacgtgggaggtaaggtagggtttggtttgagattgaaagagagaatttgtgacagttggttagggagagtaactgctttgagatgag |
1747710 |
T |
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| Q |
401 |
ggagagaaccttc |
413 |
Q |
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| T |
1747711 |
ggagagaaccttc |
1747723 |
T |
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