View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5194-Insertion-2 (Length: 871)
Name: NF5194-Insertion-2
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5194-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 7 - 637
Target Start/End: Complemental strand, 11400506 - 11399876
Alignment:
| Q |
7 |
aagaagctgcaggcagctgtgcggcagtggtttgcatgcattcgagactccgacaagacgaggaagctgatcaatggcagaagatgcatcaatgatcaaa |
106 |
Q |
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| T |
11400506 |
aagaagctgcaggcagctgtgcg-cagtggtttgcatgcattcgagactccgacaagacgaggaagctgatcaatggcagaagatgcatcaatgatcaaa |
11400408 |
T |
|
| Q |
107 |
caagaggaatccaccaaatattttaaaccgagaaaaagagtatgatgcaaggaagtaggagtttgaagtcttgttaccttcaaagaatgtttattataga |
206 |
Q |
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| T |
11400407 |
caagaggaatccaccaaatattttaaaccgagaaaaagagtatgatgcaaggaagtaggagtttgaagtcttgttaccttcaaagaatgtttattataga |
11400308 |
T |
|
| Q |
207 |
attacgttgcttcctcttgcgcctccttgcattcctcaaaattctctcggtttcttcctcttcttccttggtcaaatttccaaacaagtcttctccatgg |
306 |
Q |
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| T |
11400307 |
attacgttgcttcctcttgtgcctccttgcattcctcaaaattctctcggtttcttcctcttcttccttggtcaaatttccaaacaagtcttctccatgg |
11400208 |
T |
|
| Q |
307 |
aaacacacatatttgattagagtagattaatgaatatatgtattgtgctttgataaatcaataaaatgtgtgataactctgtaaagtctacatgatcaat |
406 |
Q |
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| T |
11400207 |
aaacacacatatttgattagagtagattaatgaatatatgtgttgtgctttgataaatcaataaaatgtgtgataactctgtaaagtctacatgatcaat |
11400108 |
T |
|
| Q |
407 |
attgcttttaagcacaactatacatgaattggattgttggcttgttgccataacctcctttaaactaggaaaatgttaactaaatgtaacagacacagcg |
506 |
Q |
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| T |
11400107 |
attgcttttaagcacacctatacatgaattggattgttggcttgttgccataacctcctttaaactaggaaaatgttaactaaatgtaacagacacagcg |
11400008 |
T |
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| Q |
507 |
cacacacctaagtagaatctctgttttcaactttggtaataattacagaaatctggagaatgcggttctttgtgtcctatgaaac-tttgttgttggaaa |
605 |
Q |
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| T |
11400007 |
cacacacctaagtagaatctctgttttcaactttggtaataattacagaaatctggagaatgcggttctttgtgtcctatgaaacttttgttgttggaaa |
11399908 |
T |
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| Q |
606 |
ttaagtataaaaaactcagagaaacattaaca |
637 |
Q |
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| T |
11399907 |
ttaagtataaaaaactcagagaaacattaaca |
11399876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 681 - 840
Target Start/End: Complemental strand, 11399879 - 11399722
Alignment:
| Q |
681 |
aacatgctcttttttctcctattccttttcctataccctttgcacacaaaatcatccatcatttgggttagggagtctcttccttgcactcctcctaacg |
780 |
Q |
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| T |
11399879 |
aacatgctcttttttctcctattccttttcctataccctttgcacacaaaatcatccatcattt-ggttagggagtctcttccttgcactcctcctaac- |
11399782 |
T |
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| Q |
781 |
cgctgcatgtccatctgttgtaaccaacttagctccctccattgggctgatgttacttgc |
840 |
Q |
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| T |
11399781 |
cgctgcatgtccatctgttgtaaccaacttagctccctccatttggctgatgttacttgc |
11399722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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