View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5194-Insertion-3 (Length: 660)
Name: NF5194-Insertion-3
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5194-Insertion-3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 660
Target Start/End: Complemental strand, 46452462 - 46451811
Alignment:
| Q |
10 |
tcgaagggtgttataccctctctaatagagtattttattgtcaagtattatgcatttgtacaaattcatcaaatcatgccataggagtgaataattactc |
109 |
Q |
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| T |
46452462 |
tcgaagggtgttataccctctctaatagagtattttattgtcaagtattatgcatttgtacaaattcatcaaatcatgccataggagtgaataattactc |
46452363 |
T |
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| Q |
110 |
tccctatcttaaaaattaaaactaagaaaaacctcaaagagaaactactatttatatttatagattggtgttggcttctaaccgcaaattttatagacct |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46452362 |
tccctctcttaaaaattaaaactaagaaaaacctcaaagagaaactactatttatatttatagattggtgttggcttctaaccgcaaattttatagactt |
46452263 |
T |
|
| Q |
210 |
taatcatgccccccttatagaagtcaataacacaattttgtgacaattacaagcttttaggctttaatcaacatcaagaaatttgcttcaaatcaatgat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452262 |
taatcatgccccccttatagaagtcaataacacaattttgtgacaattacaagcttttaggctttaatcaacatcaagaaatttgcttcaaatcaatgat |
46452163 |
T |
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| Q |
310 |
aaaaaa-tatgctttatgaaattccatacgaatatacataaagtttcatgtattggctcctaatcataaaccctaaaccttaatcgtcttcctatagaaa |
408 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452162 |
aaaaaaatatgctttatgaaattccatacgaatatacataaagtttcatgtattggctcctaatcataaaccctaaaccttaatcgtcttcctatagaaa |
46452063 |
T |
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| Q |
409 |
tctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
508 |
Q |
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| T |
46452062 |
tctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
46451963 |
T |
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| Q |
509 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
608 |
Q |
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| T |
46451962 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
46451863 |
T |
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| Q |
609 |
ccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
660 |
Q |
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| T |
46451862 |
ccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccc |
46451811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 404 - 660
Target Start/End: Original strand, 46344489 - 46344745
Alignment:
| Q |
404 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344489 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46344588 |
T |
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| Q |
504 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
603 |
Q |
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| T |
46344589 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46344688 |
T |
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| Q |
604 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
660 |
Q |
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| T |
46344689 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccc |
46344745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 404 - 660
Target Start/End: Complemental strand, 46463035 - 46462779
Alignment:
| Q |
404 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463035 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46462936 |
T |
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| Q |
504 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
603 |
Q |
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| T |
46462935 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46462836 |
T |
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| Q |
604 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
660 |
Q |
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| T |
46462835 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccaccc |
46462779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 312 - 660
Target Start/End: Complemental strand, 46471756 - 46471406
Alignment:
| Q |
312 |
aaaatatgctttatgaaattccatacgaatatacataaagtttcatgtattggctcctaatcataaaccctaaa--ccttaatcgtcttcctatagaaat |
409 |
Q |
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||||||| |||| |||||| |||| |||||||||||| ||| || | |||||| |||| || |||||||| | | |||||| | | |||||| || | |
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| T |
46471756 |
aaaatattatttaagaaattacataagaatatacataaggttctatct-ttggcttctaaccacaaaccctatagactttaatcatgtccctataaaact |
46471658 |
T |
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| Q |
410 |
cta-ttacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
508 |
Q |
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||| ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| || |
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| T |
46471657 |
ctacttacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgagga |
46471558 |
T |
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| Q |
509 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
608 |
Q |
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| T |
46471557 |
catgataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggatt |
46471458 |
T |
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| Q |
609 |
ccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
660 |
Q |
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| T |
46471457 |
ccaccaccagatatttgatcgaacaaaccctgcccttttgctaattccaccc |
46471406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 413 - 660
Target Start/End: Complemental strand, 46466448 - 46466201
Alignment:
| Q |
413 |
ttacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacata |
512 |
Q |
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||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| |
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| T |
46466448 |
ttacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatg |
46466349 |
T |
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| Q |
513 |
acaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccac |
612 |
Q |
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| T |
46466348 |
ataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccac |
46466249 |
T |
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| Q |
613 |
caccagatatttgatcaaacaaaccctgtccatttgctatttccaccc |
660 |
Q |
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|||||||||||||||| ||||||||||| || ||||||| |||||||| |
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| T |
46466248 |
caccagatatttgatcgaacaaaccctgcccttttgctaattccaccc |
46466201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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