View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5194-Insertion-4 (Length: 547)

Name: NF5194-Insertion-4
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5194-Insertion-4
NF5194-Insertion-4
[»] chr6 (8 HSPs)
chr6 (8-416)||(32641150-32641560)
chr6 (222-416)||(32643250-32643439)
chr6 (224-304)||(24085315-24085395)
chr6 (224-310)||(18001300-18001386)
chr6 (483-547)||(32641627-32641691)
chr6 (238-313)||(3384899-3384974)
chr6 (485-536)||(32643138-32643189)
chr6 (224-277)||(17996659-17996712)
[»] chr5 (6 HSPs)
chr5 (224-416)||(8698962-8699149)
chr5 (225-313)||(19227027-19227115)
chr5 (254-313)||(40622529-40622588)
chr5 (224-303)||(511109-511188)
chr5 (224-300)||(5200266-5200342)
chr5 (483-519)||(8699208-8699244)
[»] chr7 (9 HSPs)
chr7 (224-416)||(9491495-9491687)
chr7 (224-415)||(47669695-47669884)
chr7 (224-313)||(47521472-47521561)
chr7 (224-313)||(27450200-27450289)
chr7 (235-310)||(16680946-16681021)
chr7 (235-310)||(17655182-17655257)
chr7 (228-290)||(19804409-19804471)
chr7 (224-277)||(11100413-11100466)
chr7 (492-536)||(9491754-9491798)
[»] chr3 (13 HSPs)
chr3 (228-416)||(42804494-42804677)
chr3 (224-416)||(30252627-30252817)
chr3 (224-313)||(50759287-50759376)
chr3 (224-313)||(48891996-48892085)
chr3 (224-313)||(16861242-16861330)
chr3 (224-313)||(17561846-17561935)
chr3 (224-313)||(44233190-44233279)
chr3 (223-315)||(48566293-48566385)
chr3 (224-313)||(6928598-6928687)
chr3 (224-313)||(49265849-49265938)
chr3 (224-300)||(41615757-41615833)
chr3 (483-547)||(30252854-30252918)
chr3 (483-528)||(42804714-42804759)
[»] chr2 (7 HSPs)
chr2 (224-416)||(40538895-40539080)
chr2 (224-313)||(36652967-36653056)
chr2 (224-307)||(6637621-6637705)
chr2 (224-313)||(16327480-16327569)
chr2 (509-547)||(36653285-36653323)
chr2 (509-547)||(39950718-39950756)
chr2 (337-416)||(22443305-22443383)
[»] chr4 (9 HSPs)
chr4 (223-313)||(8111312-8111402)
chr4 (224-313)||(46439485-46439574)
chr4 (224-308)||(50020178-50020262)
chr4 (226-313)||(50196807-50196894)
chr4 (346-416)||(10729606-10729676)
chr4 (346-416)||(10943375-10943445)
chr4 (226-303)||(72412-72489)
chr4 (490-536)||(13624297-13624343)
chr4 (284-313)||(50020263-50020292)
[»] chr1 (7 HSPs)
chr1 (224-310)||(51337387-51337473)
chr1 (224-313)||(47505810-47505897)
chr1 (224-313)||(35255910-35255999)
chr1 (224-313)||(45829053-45829142)
chr1 (224-313)||(47661339-47661428)
chr1 (337-416)||(49854635-49854715)
chr1 (483-529)||(49854774-49854820)
[»] chr8 (6 HSPs)
chr8 (224-313)||(35555069-35555158)
chr8 (224-313)||(40075194-40075283)
chr8 (228-313)||(20859499-20859586)
chr8 (229-313)||(39831240-39831324)
chr8 (223-313)||(52556-52647)
chr8 (255-313)||(34819118-34819176)
[»] scaffold0155 (2 HSPs)
scaffold0155 (337-416)||(12709-12789)
scaffold0155 (483-532)||(12601-12650)
[»] scaffold0219 (1 HSPs)
scaffold0219 (223-313)||(313-403)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 416
Target Start/End: Original strand, 32641150 - 32641560
Alignment:
Q  8 cttcgtacatctctaccatatggaaacacgtaacataggtggttgtagaccatatctcgcttttttcctagattgggagattgcaacccgaaataagacc 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641150 cttcgtacatctctaccacatggaaacacgtaacataggtggttgtagaccatatctcgcttttttcctagattgggagattgcaacccgaaataagacc 32641249  T
Q  108 tccacttgaactaatacataagaggtatagtttggccatattgagtaaaaactaaagaaagaaaggtatgacgaggataaataagacctccgcttgaatt 207  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |    
T  32641250 tccacttgaactaatacatgagacgtatagtttgggcatattgagtaaaaaataaagaaagaaaggtatgacgaggataaataagacctccacttgaact 32641349  T
Q  208 aatatataagacgtatagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaaca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |    
T  32641350 aatatataagacgtatagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcct-aatctgtaatgtgtttcaaacacaaaata 32641448  T
Q  308 caacatgta---cctgnnnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaact 404  Q
    |||||| ||   | |                |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32641449 caacatatataccttttttttttttttttttacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaacgaagaaact 32641548  T
Q  405 aatgaaccaatg 416  Q
    ||||||||||||    
T  32641549 aatgaaccaatg 32641560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 222 - 416
Target Start/End: Complemental strand, 32643439 - 32643250
Alignment:
Q  222 atagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacct 319  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  32643439 atagtaaactaccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgttttaaacacaaaacacaacatatgtacct 32643340  T
Q  320 gnnnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
    |               |||||||||| || ||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  32643339 g-------ttttttttacgcataatgattaaaatgacaaaaaaaaattggctaaatttaacaaacaatgattaaacgaagaaactaatgaaccaatg 32643250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 24085315 - 24085395
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaa 304  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24085315 agtaaactgccgaagcgtcctgaagccaaaacagaggcagtagcttcatttcctaaacctgtaatgtatttcaaacacaaa 24085395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 18001300 - 18001386
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 310  Q
    ||||||||||  ||| ||| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  18001300 agtaaactgcataagtgtcatgaagccaaggcagaggcagtagcttcatttcctaaacttgtaatgtgtttcaaacacaaaacacaa 18001386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 32641627 - 32641691
Alignment:
Q  483 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctggtgcctcctcctcgg 547  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  32641627 cgaaaagtaaaaaacaagtcataatcctactgttggtcctggtcctactggtgcctcctcctcgg 32641691  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 3384974 - 3384899
Alignment:
Q  238 gcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  3384974 gcgtcctgaagccaatgcagaggcagtagcttcattttctgatcttgtaatgtgtttcaaacacaaaacacaacat 3384899  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 32643189 - 32643138
Alignment:
Q  485 aaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctggtgc 536  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32643189 aaaagtaaaaaacaagtcctaatcctactgctggtcctggtcctgctggtgc 32643138  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 17996659 - 17996712
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcct 277  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  17996659 agtaaactgccgaattgtcctgaagccaaggcagaggcagtagcttcatttcct 17996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 224 - 416
Target Start/End: Original strand, 8698962 - 8699149
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgn 321  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||     
T  8698962 agtaaactgtcgaagcgtcctgaagtcaaggcagaggcaatagcttcatttcctgaacctgtaatgtgtttcaaaaacaaaacacaacatatgtacctg- 8699060  T
Q  322 nnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
                  |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8699061 ------ttttttttacgcataatggttcaaatggaaaaacaaaattggctcaatttaacaaacactgattaaacgaagaaactaatgaaccaatg 8699149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 19227027 - 19227115
Alignment:
Q  225 gtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  19227027 gtaaactgccgaagcgtcctgaagccaaggcagaggcagtagcttcatttcataaacctttaatgtgtttcaaacacaaaacacaacat 19227115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 40622529 - 40622588
Alignment:
Q  254 gcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40622529 gcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 40622588  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 511109 - 511188
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaa 303  Q
    |||||||||||||||| |||||||| ||| ||| |||||||||||||||||||| ||| ||||||||||| |||||||||    
T  511109 agtaaactgccgaagcatcctgaagccaaagcaaaggcagtagcttcatttcctaaacatgtaatgtgttgcaaacacaa 511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 5200342 - 5200266
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaaca 300  Q
    ||||||||||| ||||||||||||| |||| ||||||||  | |||||||||||||||||| |||||||||||||||    
T  5200342 agtaaactgccaaagcgtcctgaagccaagacagaggcaacaacttcatttcctgaacctgcaatgtgtttcaaaca 5200266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 8699208 - 8699244
Alignment:
Q  483 cgaaaagtaaaaaacaagtcataatcctactgctggt 519  Q
    |||||||||||||||||||| ||||||||||||||||    
T  8699208 cgaaaagtaaaaaacaagtcctaatcctactgctggt 8699244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 224 - 416
Target Start/End: Original strand, 9491495 - 9491687
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgn 321  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||     
T  9491495 agtaaactgctgaagcgtcctgaagccaatgcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctg- 9491593  T
Q  322 nnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
                  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  9491594 -tttttatttttttacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaactaacaaactaatgaaccaatg 9491687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 224 - 415
Target Start/End: Original strand, 47669695 - 47669884
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgn 321  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||| |||     
T  47669695 agtaaactgccgaagcgtcctgaagccaaggcagaggcagtagattcatttcctgaacctgtaatgtgtttcaaacacaaaacagaacatatgtaactg- 47669793  T
Q  322 nnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattg---attaaacgaagaaactaatgaaccaat 415  Q
                  ||||||||||||||||||||||||||||||||||||||  |||||||||| ||   |||||||||||||||||||||||||||    
T  47669794 ------ttttttttacgcataatggttcaaatggcaaaacaaaattggctcatattaacaaacactgattattaaacgaagaaactaatgaaccaat 47669884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 47521472 - 47521561
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||| |||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47521472 agtaaactgctgaagcgtcctgaagccaaaacagagacagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 47521561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 27450200 - 27450289
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||| ||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  27450200 agtaaactgtcgaagcgtcctgaagccaagacagaggcaggaacttcatttcctgaacctataatgtgtttcaaacacaaaacacaacat 27450289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 16681021 - 16680946
Alignment:
Q  235 gaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 310  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16681021 gaagcgtcctgaagccaggacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 16680946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 17655257 - 17655182
Alignment:
Q  235 gaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 310  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17655257 gaagcgtcctgaagccaggacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 17655182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 19804471 - 19804409
Alignment:
Q  228 aactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgt 290  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||    
T  19804471 aactgccgaagcgtcctgaagccaagacagaggcagcagcttcatttcttgaacctgcaatgt 19804409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 11100466 - 11100413
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcct 277  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  11100466 agtaaactgccgaattgtcctgaagccaaggcagaggcagtagcttcatttcct 11100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 536
Target Start/End: Original strand, 9491754 - 9491798
Alignment:
Q  492 aaaaacaagtcataatcctactgctggtcctggtcctgctggtgc 536  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  9491754 aaaaacaagtcctaatcctactgctggtcatggtcctgctggtgc 9491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 228 - 416
Target Start/End: Original strand, 42804494 - 42804677
Alignment:
Q  228 aactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgnnnnn 325  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||         
T  42804494 aactgccgaagcgtcctgaagccaaagcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctg----- 42804588  T
Q  326 nnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
              || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  42804589 --ttttttttactcattatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaacgaacaaagtaatgaaccaatg 42804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 224 - 416
Target Start/End: Original strand, 30252627 - 30252817
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaa--ggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat--gtacct 319  Q
    |||||| |||||||||||||| ||| |||  |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||    
T  30252627 agtaaattgccgaagcgtcctaaagccaaaaggcaaaggcaatagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacatatgtacct 30252726  T
Q  320 gnnnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
                    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  30252727 ------ttttttttttacacataatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaacgaacaaactaatgaaccaatg 30252817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 50759376 - 50759287
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50759376 agtaaactgccgaagcgtcctgaagccaaggcagaggcagtagcttcatttcatgaacctgtaatgtgtttcaaacacaaaacacaacat 50759287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 48892085 - 48891996
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48892085 agtaaactgccgaagcgtcccgaagccaaggcagaggcagtagcttcatttcctgaacctctaatgtgtttcaaacacaaaacacaacat 48891996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 16861242 - 16861330
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16861242 agtaaactgccgaagcgtcctgaag-caagatagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 16861330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 17561846 - 17561935
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17561846 agtaaactgccgaagtgtcctgaagccaagacagagacagtagcttcatttcctgaatctgtaatgtgtttcaaacacaaaacacaacat 17561935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 44233279 - 44233190
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44233279 agtaaactgtcgatgcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtatttcaaacacaaaacacaacat 44233190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 48566385 - 48566293
Alignment:
Q  223 tagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatgt 315  Q
    |||| |||| |||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48566385 tagttaactaccgaagcgtcctgaagccaaggtagaggcagtagcttcatttcctaaacttgtaatgtgtttcaaacacaaaacacaacatgt 48566293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 6928687 - 6928598
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||  |||||| ||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6928687 agtaaacaaccgaagtgtcgtgaagccaaagcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 6928598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 49265849 - 49265938
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||| |||||||| ||||| |||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49265849 agtaaactgcagaagcgtcttgaagccaaaacagaggtactagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 49265938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 41615833 - 41615757
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaaca 300  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  41615833 agtaaactgccgaagcgtcctgaagccaagacagaggcagcagcttcatttcctgaacctgcaatgtgtttcaaaca 41615757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 483 - 547
Target Start/End: Original strand, 30252854 - 30252918
Alignment:
Q  483 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctggtgcctcctcctcgg 547  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  30252854 cgaaaagtaaaaaacaagtcctaatcctacagctggtcctggtcctgctggtgcctcctcctcgg 30252918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 42804714 - 42804759
Alignment:
Q  483 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcct 528  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  42804714 cgaaaagtaaaaaacaagtcctaatcctactgctggtcctggtcct 42804759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 224 - 416
Target Start/End: Complemental strand, 40539080 - 40538895
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatgtacctgnnn 323  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||       
T  40539080 agtaaactgtcgaagcgtcctgaagccaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaaaac-atatgtacctg--- 40538985  T
Q  324 nnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
                ||| |||||||||||| |||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||||    
T  40538984 ---ttttttttcacgaataatggttcaattggcaaaacaaaattggctcatgttaacaaacacttattaaacgaagaaactaatgaaccaatg 40538895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 36652967 - 36653056
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36652967 agtaaactgccaaagcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 36653056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 6637621 - 6637705
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaa-cacaaaaca 307  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||    
T  6637621 agtaaactgccgaagcgtcctgaagtcaagacagaggcagtaggttcatttcctgaacctgtaatgtgcttcaaatcacaaaaca 6637705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 16327480 - 16327569
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||| | | ||||||| ||| ||| | ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  16327480 agtaaactgtcaatgcgtcctcaagccaatgtagaggcagtagcttcattttctgatcgtgtaatgtgtttcaaacacaaaacacaacat 16327569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 547
Target Start/End: Original strand, 36653285 - 36653323
Alignment:
Q  509 ctactgctggtcctggtcctgctggtgcctcctcctcgg 547  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36653285 ctactactggtcctggtcctgctggtgcctcctcctcgg 36653323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 547
Target Start/End: Complemental strand, 39950756 - 39950718
Alignment:
Q  509 ctactgctggtcctggtcctgctggtgcctcctcctcgg 547  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  39950756 ctactactggtcctgatcctgctggtgcctcctcctcgg 39950718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 22443383 - 22443305
Alignment:
Q  337 cgcataatg-gttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
    ||||||||| |||||||||| ||||||||||||||| || || ||||   |||||||||| || |||| ||||||||||||    
T  22443383 cgcataatgtgttcaaatggaaaaacaaaattggcttaaattcacaa--cttgattaaaccaacaaaccaatgaaccaatg 22443305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 8111402 - 8111312
Alignment:
Q  223 tagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8111402 tagtaaactgccgaagcgtcctgaagccaagtcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 8111312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 46439574 - 46439485
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  46439574 agtaaacagccgaagcgtcctgaagccaaagcagaggcagtagcttcatttcctaaacctataatgtgtttcaaacacaaaacacaacat 46439485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 50020178 - 50020262
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacac 308  Q
    |||||||||| |||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50020178 agtaaactgctgaagcgtcctgaaaccaagacagaggcggtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacac 50020262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 50196894 - 50196807
Alignment:
Q  226 taaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||| ||||||||||||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  50196894 taaactgtcgaagcgtcctgaagccaagacagaggtaggagcttcatttcctgaacctgcaatgtgtttcaaacacaaaatacaacat 50196807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 10729606 - 10729676
Alignment:
Q  346 gttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||||    
T  10729606 gttcaaatggcaaaacaaaattggctcaattcaagaaacattaattaaacgaacaaactaatgaaccaatg 10729676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 10943375 - 10943445
Alignment:
Q  346 gttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||||    
T  10943375 gttcaaatggcaaaacaaaattggctcaattcaagaaacattaattaaacgaacaaactaatgaaccaatg 10943445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 72489 - 72412
Alignment:
Q  226 taaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaa 303  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  72489 taaactgtcgaagcgtcctgaagccaaagcagaggcagtagcttcatttactaaacttgtaatgtgtttcaaacacaa 72412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 13624297 - 13624343
Alignment:
Q  490 taaaaaacaagtcataatcctactgctggtcctggtcctgctggtgc 536  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  13624297 taaaaaacaagtcataatcatactgcttgtcctagtcctgctggtgc 13624343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 50020263 - 50020292
Alignment:
Q  284 gtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||||||||||||||||||    
T  50020263 gtaatgtgtttcaaacacaaaacacaacat 50020292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 51337473 - 51337387
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 310  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51337473 agtaaactgccgaagtgtcctgaagccaaggcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaa 51337387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 47505897 - 47505810
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  47505897 agtaaactgccgaagcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaa--acaaaacacaacat 47505810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 35255910 - 35255999
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  35255910 agtaaactgccgaagcatcctgaagccaaggcagaggcaatagcttcatttgttgaacctgtaatttgtttcaaacacaaaacacaacat 35255999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 45829142 - 45829053
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||  |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45829142 agtaaactgttgaagcgtcctgaagccaaatcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacaaaaaacacaacat 45829053  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 47661428 - 47661339
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||| || ||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  47661428 agtaaattgtcgaagcgtcctgaagccaaagcagaggcagtagcttcattttctaaacctgtaatgtgtttcaaacacaaaacacaacat 47661339  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 337 - 416
Target Start/End: Original strand, 49854635 - 49854715
Alignment:
Q  337 cgcataatg-gttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  49854635 cgcataatgtgttcaaatgacaaaacaaaattggctcaatttaacaaacactgattaaacgaacaaactaatgaaccaatg 49854715  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 483 - 529
Target Start/End: Original strand, 49854774 - 49854820
Alignment:
Q  483 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctg 529  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  49854774 cgaaaagtaagaaacaagtcctaatcctactgctggtcctggtcctg 49854820  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 35555158 - 35555069
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35555158 agtaaactgtcgaagcgtcctgaagccaaagcagaggtagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 35555069  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 40075194 - 40075283
Alignment:
Q  224 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40075194 agtaaacttccgaagcgttctgaagccaaagcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 40075283  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 20859586 - 20859499
Alignment:
Q  228 aactgccgaagcgtcctgaagtcaaggca--gaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20859586 aactgccgaagcgtcctgaagccaagacaaagaggcagtagcttcatttcctgaacctgcaatgtgtttcaaacacaaaacacaacat 20859499  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 39831240 - 39831324
Alignment:
Q  229 actgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||||||||||||||||||| |||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||    
T  39831240 actgccgaagcgtcctgaagccaagacagaggcattaacttcatttccggaacctgtaatgtgtttcaaacacaaaacacaacat 39831324  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 52647 - 52556
Alignment:
Q  223 tagtaaactgcc-gaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||| ||||||| |||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  52647 tagttaactgcctgaagcgtcctgaagccaagacagaggcagtagctttatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 52556  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 34819118 - 34819176
Alignment:
Q  255 cagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  34819118 cagaggcagtagcttcatttcctaaacctgtaatatgtttcaaacacaaaacacaacat 34819176  T

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Target: scaffold0155 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 12789 - 12709
Alignment:
Q  337 cgcataatg-gttcaaatggcaaaacaaaattggctcaatttaacaaacattgattaaacgaagaaactaatgaaccaatg 416  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||    
T  12789 cgcataatgtgttcaaatggtaaaacaaaattggctcaattaaacaaagattgattaaacgaacaaactaatgaaccaatg 12709  T

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Target: scaffold0155; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 12650 - 12601
Alignment:
Q  483 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctg 532  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  12650 cgaaaagtaaaaaataagtcctaatcctactgctggtcctggtcgtgctg 12601  T

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Target: scaffold0219 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 403 - 313
Alignment:
Q  223 tagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 313  Q
    |||| |||| |||| || |||||||| ||| |||||| ||| | |||||||| |||| |||||||||||||| ||||||||||||||||||    
T  403 tagttaactaccgatgcatcctgaagccaatgcagagacagaaacttcattttctgatcctgtaatgtgtttaaaacacaaaacacaacat 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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