View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5194-Insertion-5 (Length: 175)

Name: NF5194-Insertion-5
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5194-Insertion-5
NF5194-Insertion-5
[»] chr6 (28 HSPs)
chr6 (8-175)||(26803870-26804037)
chr6 (14-175)||(28787662-28787826)
chr6 (14-175)||(28793783-28793947)
chr6 (8-175)||(27680374-27680541)
chr6 (74-175)||(26647903-26648004)
chr6 (74-175)||(26753871-26753972)
chr6 (41-175)||(27603331-27603462)
chr6 (75-175)||(31285983-31286083)
chr6 (75-172)||(26624698-26624795)
chr6 (75-172)||(26730675-26730772)
chr6 (75-144)||(27697244-27697313)
chr6 (72-147)||(27215904-27215979)
chr6 (70-144)||(27717152-27717226)
chr6 (75-140)||(27609778-27609843)
chr6 (62-148)||(26885518-26885604)
chr6 (75-160)||(26825258-26825343)
chr6 (75-142)||(25512348-25512415)
chr6 (75-142)||(25581179-25581246)
chr6 (75-142)||(26144325-26144392)
chr6 (75-142)||(25484516-25484583)
chr6 (75-150)||(27704912-27704987)
chr6 (75-147)||(27529962-27530034)
chr6 (75-142)||(26057379-26057446)
chr6 (75-142)||(26077349-26077416)
chr6 (67-150)||(26938478-26938561)
chr6 (75-148)||(26863031-26863104)
chr6 (75-140)||(26657421-26657486)
chr6 (75-140)||(26763392-26763457)
[»] scaffold0277 (2 HSPs)
scaffold0277 (67-175)||(3362-3470)
scaffold0277 (67-175)||(12325-12433)
[»] scaffold1870 (1 HSPs)
scaffold1870 (64-175)||(193-304)
[»] scaffold0419 (1 HSPs)
scaffold0419 (64-175)||(8911-9022)
[»] chr8 (1 HSPs)
chr8 (75-144)||(29272496-29272565)
[»] chr1 (3 HSPs)
chr1 (75-144)||(266998-267067)
chr1 (62-142)||(28126320-28126400)
chr1 (75-148)||(28132159-28132232)
[»] scaffold0349 (1 HSPs)
scaffold0349 (70-144)||(2192-2266)
[»] chr2 (1 HSPs)
chr2 (62-148)||(17991860-17991946)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 26804037 - 26803870
Alignment:
Q  8 gtcctttatcaagtcatgtactcttacaacatcaatagatcccgaatggtgacaagtactaatcttaatgagagatttttcagccaacacttctagatga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26804037 gtcctttatcaagtcatgtactcttacaacatcaatagatcccgaatggtaacaagtactaatcttaatgagagatttttcagccaacactcctagatga 26803938  T
Q  108 tgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26803937 tgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaa 26803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 28787826 - 28787662
Alignment:
Q  14 tatcaagtcatgtactcttacaacatcaatagatcccgaatggtgacaagtacta---atcttaatgagagatttttcagccaacacttctagatgatgt 110  Q
    |||||||||||||| ||| ||| ||| ||||||||||||||||| | ||||||||   ||||||| |||||||||||||||||||||| |||||||||||    
T  28787826 tatcaagtcatgtaatctcacatcataaatagatcccgaatggtaagaagtactactaatcttaacgagagatttttcagccaacactcctagatgatgt 28787727  T
Q  111 gttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaa 175  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||    
T  28787726 gttatgcaatggccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaa 28787662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 28793947 - 28793783
Alignment:
Q  14 tatcaagtcatgtactcttacaacatcaatagatcccgaatggtgacaagtacta---atcttaatgagagatttttcagccaacacttctagatgatgt 110  Q
    |||||||||||||| ||| ||| ||| ||||||||||||||||| | ||||||||   ||||||| |||||||||||||||||||||| |||||||||||    
T  28793947 tatcaagtcatgtaatctcacatcataaatagatcccgaatggtaagaagtactactaatcttaacgagagatttttcagccaacactcctagatgatgt 28793848  T
Q  111 gttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaa 175  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||    
T  28793847 gttatgcaatggccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaa 28793783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 27680541 - 27680374
Alignment:
Q  8 gtcctttatcaagtcatgtactcttacaacatcaatagatcccgaatggtgacaagtactaatcttaatgagagatttttcagccaacacttctagatga 107  Q
    |||||||||||||||||||| ||| ||| ||| ||||||||||||| ||| | ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  27680541 gtcctttatcaagtcatgtaatctcacatcattaatagatcccgaagggtaataagtactaatcttaacgagagattttccagccaacactcctagatga 27680442  T
Q  108 tgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaa 175  Q
    ||||||||||||||| |||||||| ||  |||||||||||| ||||||| ||||  | ||||||||||    
T  27680441 tgtgttatgcaatggtcataatgagcacaaagtatatcttcgaactccttccattgatatcctttgaa 27680374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 26648004 - 26647903
Alignment:
Q  74 aatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttg 173  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||    
T  26648004 aatgagagatttttcagccaacactccaagatgatgtgttatgcaatggccataatgataacgaagtatatcttcaaactcctcccatctacatcctttg 26647905  T
Q  174 aa 175  Q
    ||    
T  26647904 aa 26647903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 26753972 - 26753871
Alignment:
Q  74 aatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttg 173  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||    
T  26753972 aatgagagatttttcagccaacactccaagatgatgtgttatgcaatggccataatgataacgaagtatatcttcaaactcctcccatctacatcctttg 26753873  T
Q  174 aa 175  Q
    ||    
T  26753872 aa 26753871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 27603331 - 27603462
Alignment:
Q  41 aatagatcccgaatggtgacaagtactaatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagt 140  Q
    ||||||||| |||||||   |||||| ||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||    
T  27603331 aatagatccagaatggt---aagtacaaatctgaacaagagatttttcagccaacactcctagatgatgtgttatgcaatggccataatgagcacgaagt 27603427  T
Q  141 atatcttcaaactcctcccatccacatcctttgaa 175  Q
    |||||||||| | | ||| ||||||||||||||||    
T  27603428 atatcttcaaccacttccaatccacatcctttgaa 27603462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 31286083 - 31285983
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttga 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |  ||| ||||||| ||||||||||    
T  31286083 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgagcatggagtatatctttgacatccgcccatccgcatcctttga 31285984  T
Q  175 a 175  Q
    |    
T  31285983 a 31285983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 26624795 - 26624698
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatccttt 172  Q
    |||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||  |||||||||||||||    
T  26624795 atgagacatttgtcaaccaacactcctagatgatgtgttatgcaatggccataatgagcacgaagcatatcttcgaactccctccatccacatccttt 26624698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 26730772 - 26730675
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccacatccttt 172  Q
    |||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||  |||||||||||||||    
T  26730772 atgagacatttgtcaaccaacactcctagatgatgtgttatgcaatggccataatgagcacgaagcatatcttcgaactccctccatccacatccttt 26730675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 27697244 - 27697313
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatat 144  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  27697244 atgagagatttttcagccaacactgctagatgatgtgttatggaatggccataatgagcatgaagcatat 27697313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 27215979 - 27215904
Alignment:
Q  72 ttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatctt 147  Q
    ||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||  |||||||||||||||    
T  27215979 ttaatgagagatttttcggccaacacttcaacatgatgttttatgcaatggccataatgggcatgaagtatatctt 27215904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 27717152 - 27717226
Alignment:
Q  70 tcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatat 144  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  || ||||||||    
T  27717152 tctttatgagagatttttcaaccaacactcctagatgatgtgttatgcaatggccataatgagaattaagtatat 27717226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 27609778 - 27609843
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagt 140  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||    
T  27609778 atgagagatttttcagccaacactcctagatgatgtgttatggaatggccataatgagaatgaagt 27609843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 26885604 - 26885518
Alignment:
Q  62 agtactaatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttc 148  Q
    |||| ||||||| | ||||||||||||  |||||||| | | ||||||| |||||||||||||||||||| ||||||||||||||||    
T  26885604 agtattaatctttaagagagatttttcgaccaacactccaacatgatgttttatgcaatggccataatgagcatgaagtatatcttc 26885518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 26825343 - 26825258
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctccca 160  Q
    |||||||||||||| ||||||||||  | ||||||| ||||||||||||| ||||||  | ||||||||||||| |||||||||||    
T  26825343 atgagagatttttctgccaacacttgaacatgatgttttatgcaatggccgtaatgagtacgaagtatatcttcgaactcctccca 26825258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 25512415 - 25512348
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||||||||||||||||||||||| | | |||||||  ||||||||||||||||||| ||||||||||    
T  25512415 atgagagatttttcagccaacactccaacatgatgttctatgcaatggccataatgagcatgaagtat 25512348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 25581246 - 25581179
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||||||||||||||||||||||| | | |||||||  ||||||||||||||||||| ||||||||||    
T  25581246 atgagagatttttcagccaacactccaacatgatgttctatgcaatggccataatgagcatgaagtat 25581179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 26144392 - 26144325
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||||||||||||||||||||||| | | |||||||  ||||||||||||||||||| ||||||||||    
T  26144392 atgagagatttttcagccaacactccaacatgatgttctatgcaatggccataatgagcatgaagtat 26144325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 25484583 - 25484516
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||||| ||||||||||||||||| | | |||||||  ||||||||||||||||||| ||||||||||    
T  25484583 atgagacatttttcagccaacactccaacatgatgttctatgcaatggccataatgagcatgaagtat 25484516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 27704912 - 27704987
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaa 150  Q
    ||||| || |||||||||||||||  ||||||||||||||| |||||| ||||||||  ||||||||||| |||||    
T  27704912 atgagtgacttttcagccaacactcgtagatgatgtgttatacaatggtcataatgagaatgaagtatattttcaa 27704987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 27529962 - 27530034
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatctt 147  Q
    |||||||||||||||||||| ||| | | |||||||  ||||||||| ||||||||| |||||||||| ||||    
T  27529962 atgagagatttttcagccaaaactgcaacatgatgtactatgcaatgaccataatgagcatgaagtatttctt 27530034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 26057446 - 26057379
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||||||||||||||||||||||| | | |||||||  ||||  ||||||||||||| ||||||||||    
T  26057446 atgagagatttttcagccaacactccaacatgatgttctatgggatggccataatgagcatgaagtat 26057379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 26077416 - 26077349
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||||||||||||||||||||||| | | |||||||  ||||  ||||||||||||| ||||||||||    
T  26077416 atgagagatttttcagccaacactccaacatgatgttctatgggatggccataatgagcatgaagtat 26077349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 26938561 - 26938478
Alignment:
Q  67 taatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaa 150  Q
    ||||||| ||||||||||| | | |||||||| | | ||||| | |||||||||| ||||||||| |||||||| |||||||||    
T  26938561 taatctttatgagagatttattaaccaacactccaacatgattttttatgcaatgaccataatgagcatgaagtttatcttcaa 26938478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 26863104 - 26863031
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttc 148  Q
    |||||||||||||||||||||||| | | ||||||| |||||||  |||||||||||   | ||||||||||||    
T  26863104 atgagagatttttcagccaacactccaacatgatgttttatgcatcggccataatgatatttaagtatatcttc 26863031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 26657486 - 26657421
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagt 140  Q
    ||||||||||||||| |||||||| | | ||||||| |||||||||| ||||| ||| || |||||    
T  26657486 atgagagatttttcaaccaacactccaacatgatgttttatgcaatgaccatagtgagcaagaagt 26657421  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 26763457 - 26763392
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagt 140  Q
    ||||||||||||||| |||||||| | | ||||||| |||||||||| ||||| ||| || |||||    
T  26763457 atgagagatttttcaaccaacactccaacatgatgttttatgcaatgaccatagtgagcaagaagt 26763392  T

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Target: scaffold0277 (Bit Score: 85; Significance: 9e-41; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 3362 - 3470
Alignment:
Q  67 taatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccaca 166  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||    
T  3362 taatcttaacgagagatttttcagccaacactactagatgatgtgttatgcgatggccataatgagcacgaagtatatattcaaactcctcccatccaca 3461  T
Q  167 tcctttgaa 175  Q
    |||||||||    
T  3462 tcctttgaa 3470  T

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Target: scaffold0277; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 12325 - 12433
Alignment:
Q  67 taatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatccaca 166  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||| |||||||||    
T  12325 taatcttaacgagagatttttcagccaacactactagatgatgtgttatgcgatggccataatgagcacgaagtatatattcaaactccttccatccaca 12424  T
Q  167 tcctttgaa 175  Q
    |||||||||    
T  12425 tcctttgaa 12433  T

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Target: scaffold1870 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 304 - 193
Alignment:
Q  64 tactaatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatcc 163  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || | ||||||||||||||||||| ||||||    
T  304 tactaatcttaacgagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatcc 205  T
Q  164 acatcctttgaa 175  Q
    ||||||||||||    
T  204 acatcctttgaa 193  T

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Target: scaffold0419 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 9022 - 8911
Alignment:
Q  64 tactaatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttcaaactcctcccatcc 163  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || | ||||||||||||||||||| ||||||    
T  9022 tactaatcttaacgagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatcc 8923  T
Q  164 acatcctttgaa 175  Q
    ||||||||||||    
T  8922 acatcctttgaa 8911  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 29272496 - 29272565
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatat 144  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  29272496 atgagagatttttcagccaatactcctagatgatgtgttatgcaatggccataatgagaatgaagtatat 29272565  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 266998 - 267067
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatat 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||    
T  266998 atgagagatttttcagccaacactcctagatgatgtgttatgcagtggccataatgagaatgaagtatat 267067  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 28126320 - 28126400
Alignment:
Q  62 agtactaatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtat 142  Q
    |||| |||||| |||||||||||||||| |||||||| | | ||||||  |||||||||||||||||||| ||||||||||    
T  28126320 agtattaatctcaatgagagatttttcaaccaacactccaacatgatgctttatgcaatggccataatgagcatgaagtat 28126400  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 28132159 - 28132232
Alignment:
Q  75 atgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttc 148  Q
    ||||||||||||||  |||||||| | | ||||||| ||||||||||||||| |||| |||||||||| |||||    
T  28132159 atgagagatttttcgaccaacactccaacatgatgttttatgcaatggccattatgagcatgaagtatctcttc 28132232  T

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Target: scaffold0349 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 2192 - 2266
Alignment:
Q  70 tcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatat 144  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  || ||||||||    
T  2192 tctttatgagagatttttcaaccaacactcctagatgatgtgttatgcaatggccataatgagaattaagtatat 2266  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 17991860 - 17991946
Alignment:
Q  62 agtactaatcttaatgagagatttttcagccaacacttctagatgatgtgttatgcaatggccataatgaacatgaagtatatcttc 148  Q
    |||| ||||||| ||||||||||| ||| |||||||||| || ||   | |||||||||| ||||||||| ||||||| || |||||    
T  17991860 agtattaatctttatgagagatttatcaaccaacacttcgaggtggctttttatgcaatgaccataatgaccatgaagcatttcttc 17991946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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