View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5194_high_1 (Length: 371)
Name: NF5194_high_1
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5194_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 11400501 - 11400860
Alignment:
| Q |
2 |
cttctttccttcttcccatcaaaagcttgcagtttttatttttacttaaaagctttaagttgtatccctaagtttatcagttattatctgataatatcag |
101 |
Q |
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| T |
11400501 |
cttctttccttcttcccatcaaaagcttgcagtttttatttttactttaaagctttaagttgtatccctaagtttatcagttattatctgataatatcag |
11400600 |
T |
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| Q |
102 |
tcccacactcctcctccaaccccaaatccaaacatagctcaaagcaaacaagacaaaaatattcaaagtatattttattttttcataaattttagaatga |
201 |
Q |
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| T |
11400601 |
tcccacactcctcctccaaccccaaatccaaacatagctcaaagcaaacaggacaaaaatattcaaagtatattttattttttcataaattttagaatga |
11400700 |
T |
|
| Q |
202 |
aattcgaaagatagtggtgtatcttataaaaaacgatggtgatgtatcatgcaccacgtataatgttgttgcacatgagctttgatcannnnnnnggtat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
11400701 |
cattcgaaagatagtggtgtatcttataaaaaacgatggtgatgtatcatgcaccacgtataatgttgttgcacatgaactttgatca-ttttttggtat |
11400799 |
T |
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| Q |
302 |
aannnnnnngtgtgatgagttcgcaacttaaaattcttaatcctttttatattctgtgctc |
362 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11400800 |
aatttttttgtgtgatgagctcgcaacttaaaattcttaatcctttttatattttgtgctc |
11400860 |
T |
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