View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5194_high_4 (Length: 337)
Name: NF5194_high_4
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5194_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 30400344 - 30400492
Alignment:
| Q |
30 |
acctaaccttccattacaaataatgtgggtatagagttattgctaactcgctataataaaacaaatcaaagagaatgactttaactcctctaacctcttt |
129 |
Q |
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| T |
30400344 |
acctaacattccattacaaataatgtgggtatagagttattgctaactcgctataataaaactaatcaaagagaattactttaactcctctaacctcttt |
30400443 |
T |
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| Q |
130 |
tcttctattcatttgttttcttcacaaagttgagagtatctgtcatcat |
178 |
Q |
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| T |
30400444 |
tcttctattcatttgttttcttcacaaagttgagagtatctgtcatcat |
30400492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 43075244 - 43075175
Alignment:
| Q |
263 |
tcagtggtccattccttcttccctttcacaccattttcactttcattctcttctgtacctctctgcttct |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43075244 |
tcagtggtccattccttcttccctttcacaccattttcactttcattctcttctgtacctctctgcttct |
43075175 |
T |
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