View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5194_low_2 (Length: 311)

Name: NF5194_low_2
Description: NF5194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5194_low_2
NF5194_low_2
[»] chr3 (4 HSPs)
chr3 (121-297)||(21966567-21966753)
chr3 (121-297)||(21989003-21989189)
chr3 (118-288)||(21966963-21967144)
chr3 (118-288)||(21989399-21989580)
[»] chr6 (2 HSPs)
chr6 (122-288)||(20487184-20487361)
chr6 (118-288)||(20481638-20481819)
[»] chr2 (2 HSPs)
chr2 (1-121)||(45622387-45622507)
chr2 (118-155)||(3833504-3833541)
[»] chr8 (2 HSPs)
chr8 (119-288)||(24860149-24860329)
chr8 (122-283)||(24858944-24859115)
[»] scaffold0625 (1 HSPs)
scaffold0625 (118-184)||(8000-8066)
[»] chr7 (1 HSPs)
chr7 (118-184)||(18993631-18993697)
[»] chr4 (1 HSPs)
chr4 (106-155)||(11384176-11384225)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 21966567 - 21966753
Alignment:
Q  121 aggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattt-----------tggtcctttaattaagattcgtc 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||           |||||||||||||||||||||||    
T  21966567 aggcttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtc 21966666  T
Q  210 catcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatggtcgctgatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  21966667 catcgtttatgtcctttccgtcaaacattaattaagaaatg-taagtctcacacatggtcgctgatgtggcgcttatggtcgctgatg 21966753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 21989003 - 21989189
Alignment:
Q  121 aggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattt-----------tggtcctttaattaagattcgtc 209  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||           |||||||||||||||||||||||    
T  21989003 aggcttaattatatatttggtcccttaaataattaccaaaattcgttttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtc 21989102  T
Q  210 catcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatggtcgctgatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  21989103 catcgtttatgtcctttccgtcaaacattaattaagaaatg-taagtctcacacatggtcgctgatgtggcgcttatggtcgctgatg 21989189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 21967144 - 21966963
Alignment:
Q  118 tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattt-----------tggtcctttaattaagattc 206  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||           ||||||||||||||||||||    
T  21967144 tttaggcttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattc 21967045  T
Q  207 gtccatcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatgg 288  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  21967044 gtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgg 21966963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 21989580 - 21989399
Alignment:
Q  118 tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattt-----------tggtcctttaattaagattc 206  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||           ||||||||||||||||||||    
T  21989580 tttaggcttaattatatatctggtccctcaaataattaccaatattcattttggtcccttaattaatttaagtttcattttggtcctttaattaagattc 21989481  T
Q  207 gtccatcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatgg 288  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  21989480 gtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgg 21989399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 20487361 - 20487184
Alignment:
Q  122 ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaatttt-----------ggtcctttaattaagattcgtcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||||    
T  20487361 ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtcc 20487262  T
Q  211 atcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatgg 288  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  20487261 atcgtttatgtcctttccgtcaaactttaattaagaaacgttaagtctcacacatggtcgctgatgtggcgcttatgg 20487184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 20481638 - 20481819
Alignment:
Q  118 tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaattt-----------tggtcctttaattaagattc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||           ||||||||||||||||||||    
T  20481638 tttaggcttaattatatatctggtcccttaaataattaccaaaattcggtttggtcccttatttaattttagtctcattttggtcctttaattaagattc 20481737  T
Q  207 gtccatcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatgg 288  Q
    ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| | |||||||||||||||||    
T  20481738 gtccatcgtttatgtcctttccgtcaaactttaattaagaaacgctaagtctcacacatggttgctgatgtggcgcttatgg 20481819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 45622507 - 45622387
Alignment:
Q  1 gtatgccacgttattaaattcatggattcatggggtactgccccaaggcaacatctagaatgggaaagctgatcaagtgcagttaattaatgtcatagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622507 gtatgccacgttattaaattcatggattcatggggtactgccccaaggcaacatctagaatgggaaagctgatcaagtgcagttaattaatgtcatagtc 45622408  T
Q  101 attgatatattgttaaattta 121  Q
    |||||||||||||||||||||    
T  45622407 attgatatattgttaaattta 45622387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 3833504 - 3833541
Alignment:
Q  118 tttaggcttaattatatatctggtcccttaaataatta 155  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3833504 tttaggcttaattatataattggtcccttaaataatta 3833541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 24860329 - 24860149
Alignment:
Q  119 ttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaatta-----------attttggtcctttaattaagattcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||| | ||    
T  24860329 ttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattatttttagactcattttggtcctttaattaagctccg 24860230  T
Q  208 tccatcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgcttatgg 288  Q
    ||||||||||||| |||||||||||||  ||||||  |||| ||||||||||||| ||||||| |||||||||||||||||    
T  24860229 tccatcgtttatgccctttccgtcaaattttaattttgaaacgttaagtctcacatatggtcgctgatgtggcgcttatgg 24860149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 24858944 - 24859115
Alignment:
Q  122 ggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaatta-----------attttggtcctttaattaagattcgtcc 210  Q
    ||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||           |||||||||||||||||||| | |||||    
T  24858944 ggcttaattatatatctaggcc-ttaaataattatcaaaattcgttttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtcc 24859042  T
Q  211 atcgtttatgtcctttccgtcaaacattaattaagaaatgttaagtctcacacatggtcgttgatgtggcgct 283  Q
    ||||||| ||| |||||||| ||| ||| |||||||||||||||||||||||||||| || ||||||||||||    
T  24859043 atcgtttttgttctttccgttaaaaatttattaagaaatgttaagtctcacacatgggcgctgatgtggcgct 24859115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 8066 - 8000
Alignment:
Q  118 tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaat 184  Q
    |||||||||||||| || | ||||||||||||||||||  ||| |||  ||||||||||||||||||    
T  8066 tttaggcttaattacatctttggtcccttaaataattatgaaatttcactttggtcccttaattaat 8000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 18993631 - 18993697
Alignment:
Q  118 tttaggcttaattatatatctggtcccttaaataattaccaaaattcgttttggtcccttaattaat 184  Q
    |||||||||||||| || | ||||||||||||||||||  ||| |||  ||||||||||||||||||    
T  18993631 tttaggcttaattacatctttggtcccttaaataattatgaaatttcactttggtcccttaattaat 18993697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 11384176 - 11384225
Alignment:
Q  106 tatattgttaaatttaggcttaattatatatctggtcccttaaataatta 155  Q
    ||||| ||| ||||||||||||||||||||  ||||||||||||||||||    
T  11384176 tatatagtttaatttaggcttaattatataaatggtcccttaaataatta 11384225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University