View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5195-Insertion-1 (Length: 1048)

Name: NF5195-Insertion-1
Description: NF5195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5195-Insertion-1
NF5195-Insertion-1
[»] chr3 (6 HSPs)
chr3 (7-1035)||(3166462-3167493)
chr3 (214-1035)||(2022225-2023045)
chr3 (535-985)||(3139116-3139567)
chr3 (588-920)||(3156896-3157228)
chr3 (19-141)||(2022074-2022192)
chr3 (280-386)||(3139739-3139845)
[»] chr8 (1 HSPs)
chr8 (495-956)||(23851835-23852297)
[»] chr5 (6 HSPs)
chr5 (796-974)||(1760082-1760252)
chr5 (804-975)||(1724450-1724613)
chr5 (745-921)||(1738980-1739156)
chr5 (796-911)||(1744374-1744489)
chr5 (212-321)||(1737829-1737936)
chr5 (835-920)||(1763481-1763566)
[»] chr7 (4 HSPs)
chr7 (853-985)||(7491124-7491257)
chr7 (853-985)||(7498845-7498978)
chr7 (837-962)||(7484393-7484519)
chr7 (501-567)||(7499168-7499234)


Alignment Details
Target: chr3 (Bit Score: 854; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 7 - 1035
Target Start/End: Original strand, 3166462 - 3167493
Alignment:
Q  7 attaagccaagtaacccgtgttgaagaaaatataaacatattaatcaatgatgaagccaaaattaaattcgaaattattaccagttttgcttctttctca 106  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3166462 attaagccaagca-cccgtgttgaagaaaatataaacatattaatcaatgatgaagccaaaattaaattcgaaattattaccagttttgcttatttctca 3166560  T
Q  107 gtttgaaatctcgtttgaactacatcagaactatgatgtactaacaccacttatccaatattgaagatttgaataactnnnnnnnttaaacacactcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||       |||||||||||||||    
T  3166561 gtttgaaatctcgtttgaactacatcagaactatgatgtactaacaccacttatccaatatggaagatttgactaactaaaaaaattaaacacactcatt 3166660  T
Q  207 acatcaaaatcattttaggaaggtaaaaatattcatgcactaacctaatgggtgccaatatccttcctcacaccgtttcaaattttcaatccttagctat 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  3166661 acatcaaaatcattttaggaaggtaaaaatattcatgcacaaacctaatggtttccaatatccttcctcacaccgtttcaaattttcaatccttagctat 3166760  T
Q  307 tataattataattcaaataataacagcacaaaatatgcatatgatttatgcttccttatttataaagatatttgcattaaatcaaatatttgttttttga 406  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3166761 tataattataattcaaataataacagcacaaaatatgcatgtgatttatgcttccttatttataaagatatttgcattaaatcaaatatttgttttttga 3166860  T
Q  407 ataaataacccttcatataagcttttcatttcatcatatcataaaatcacaactctattctccaacataacgtattgttttgtttgacatccttaatttt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3166861 ataaataacccttcatataagcttttcatttcatcatatcataaaatcacaactctattctccaacataacgtattgttttgtttgatatccttaatttt 3166960  T
Q  507 taccatggcatcccaatcctcaagggtgtctgccacttcagaagatcaaggtgattcttccaactcnnnnnnngaggtgatcatgaaggagattgaacat 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||    
T  3166961 taccatggcatcccaatcctcaagggtgtctgccacttcagaagatcaaggtgattcatccaactcaaaaaaagaggtgatcatgaaggagattgaacat 3167060  T
Q  607 gatcatccctcaaactctaatcccaacaagtctattgatttcgttaagctatccaaagacgattcagttctcgggtcggaggtgcaagaacacaactttt 706  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3167061 gatcaaccctcaaactctaatcccaacaagtctattgatttcgttaagctatccaaagacgattcagttctcgggtcggaggtgcaagaacacaactttt 3167160  T
Q  707 tcggccctattcaaggtgcttcatcatannnnnnncctaataacaacaatgaagagaaagatgagaacaacaatgatgaaaacaattcagattcaaagtc 806  Q
    |||||||||||||||||| |||||||||       | ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3167161 tcggccctattcaaggtggttcatcatatttttttcgtaataacaacaatgaagggaaagatgagaacaacaatgctgagaacaattcagattcaaagtc 3167260  T
Q  807 tttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgt 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3167261 tttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgt 3167360  T
Q  907 aaacaaaggtatgaaaatggtg-ttttggtttagggcaaccttactttaacccttattttagttatccaagtactc-ttttaca-cctcttattat-agg 1002  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||    
T  3167361 aaacaaaagtatgaaaatggtgtttttggtttagggcaaccttactttaacccttattttagttatccaaatactctttttacaccctcttattataagg 3167460  T
Q  1003 ggcttggacctagaatggaatccatgattcaaa 1035  Q
    |||||||| ||||||||||||||||||||||||    
T  3167461 ggcttggaactagaatggaatccatgattcaaa 3167493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 214 - 1035
Target Start/End: Original strand, 2022225 - 2023045
Alignment:
Q  214 aatcattttaggaaggtaaaaatattcatgcac---taacctaatgggtgccaatatccttcctcacaccgtttcaaattttcaatccttagctattata 310  Q
    |||||||||||||||||||| ||||||||||||   |||   ||||||||| ||||||||||||  || |||||||||||||||||||||||||||||||    
T  2022225 aatcattttaggaaggtaaagatattcatgcacaaataaataaatgggtgc-aatatccttccttgcatcgtttcaaattttcaatccttagctattata 2022323  T
Q  311 attataattcaaataata--acagcacaaaatatgcatatgatttatgcttccttatttataaagatatttgcattaaatcaaatatttgttttttgaat 408  Q
    ||||||| ||||||||||  |||||  ||||| |||||||||| | | |||| |||||||||||||||||| |||||| ||||||||||    ||  |||    
T  2022324 attataactcaaataatataacagcttaaaatttgcatatgatatctccttctttatttataaagatatttacattaactcaaatattt----ttaaaat 2022419  T
Q  409 aaataacccttcatataagcttttcatttcatcatatcataaaatcacaactctattctccaacataacgtattgttttgtttgacatccttaattttta 508  Q
    |||||| ||||| ||||||||| || |||||||| ||||  ||  |||||| |||||||||||||||| | |||||||  |     ||||||||||| ||    
T  2022420 aaataagccttcttataagcttctcttttcatcaaatcagtaatccacaaccctattctccaacataaagcattgtttgct-----atccttaatttgta 2022514  T
Q  509 ccatggcatcccaatcctcaagggtgtctgccacttcagaagatcaaggtgattcttccaactcnnnnnnngaggtgatcatgaaggagattgaacatga 608  Q
    | ||||||||||||||||| || || || ||||||||| |||||||||||||||||||||||||           |||||  ||||||||||||||||||    
T  2022515 ctatggcatcccaatcctctagcgtctcagccacttcacaagatcaaggtgattcttccaactcaaaaaaaattatgatcgagaaggagattgaacatga 2022614  T
Q  609 tcatccctcaaactctaatcccaacaagtctattgatttcgttaagctatccaaagacgattcagttctcgggtcggaggtgcaagaacacaactttttc 708  Q
    ||| || ||||| || ||||||||||||| | |||||||||| |||||||| ||||||||||| |||||  |||| ||||||||||| ||| | |||||     
T  2022615 tcaaccatcaaattccaatcccaacaagttttttgatttcgtgaagctatcgaaagacgattcggttcttaggtcagaggtgcaagagcacgattttttt 2022714  T
Q  709 ggccctattcaaggtgcttcatcatannnnnnncctaataacaacaatgaagagaaagatgagaacaacaatgatgaaaacaattcagattcaaagtctt 808  Q
    ||| || ||||||  | ||| || |        |||| |||||||||||||  |||| | ||||||||| |||| || || |||||||||||||||||||    
T  2022715 ggcacttttcaagtcggttcctcgtctcgttttcctagtaacaacaatgaaaggaaaaacgagaacaacgatgaagagaagaattcagattcaaagtctt 2022814  T
Q  809 tttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaa 908  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  2022815 tttcatgttgtttttgcaagagaaaattttctacttcgcaagccttaggaggacaccagaatgcccataaggctgaacgtacgttagaaaaacaacgtaa 2022914  T
Q  909 acaaaggtatgaaaatggtg-ttttggtttagggcaaccttactttaacccttattttagttatccaagtactc-ttttacac-ctcttattatag-ggg 1004  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||| ||| |      
T  2022915 acaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttattttagttatccaagtactctttttacacgcccttattttagcgca 2023014  T
Q  1005 cttggacctagaatggaatccatgattcaaa 1035  Q
     ||||  ||||||||||||||||||||||||    
T  2023015 attgggactagaatggaatccatgattcaaa 2023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 535 - 985
Target Start/End: Complemental strand, 3139567 - 3139116
Alignment:
Q  535 tctgccacttcagaagatcaaggtgattcttccaactcnnnnnnngaggtgatcatgaaggagattgaacatgatcatccctcaaactctaatcccaaca 634  Q
    |||| ||||||| |||||||||||||||||||| ||||       ||||||| |||||||||||||||||| | |||  |||||||||| ||  |  |||    
T  3139567 tctgtcacttcacaagatcaaggtgattcttcccactccaaaaaagaggtgaacatgaaggagattgaacaagttcaaacctcaaactcaaaatcagaca 3139468  T
Q  635 agtctattgatttcgttaagctatccaaagacgattcagttctcgggtcggaggtgcaagaacacaactttttcggccctattcaaggtgcttcatcata 734  Q
    |  ||||||||||  | |||||||| || ||| |||| |||  || |||| || ||||||| ||||||||||| |||||||||| || || |||||| |     
T  3139467 aacctattgattttttgaagctatcgaatgacaattcggtttccgtgtcgaagatgcaagagcacaacttttttggccctattcgagttggttcatcttc 3139368  T
Q  735 nnnnnnncctaataacaacaatgaagagaaagatgagaacaacaatgatgaaaacaattcagattcaaagtctttttcatgttgtttttgcaagagaaaa 834  Q
           ||||||||||||||| ||| |||||||| |||||||  |||  | || | ||||||| ||  |||||| |  || | ||||||||||||| ||    
T  3139367 ttctttacctaataacaacaatcaagggaaagatgcgaacaacggtgaaaagaagacttcagatccagtgtctttcttgtgctctttttgcaagagacaa 3139268  T
Q  835 ttttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaggtatgaaaatggtg-ttttg 933  Q
    |||||||| ||||| ||||| |||||||||||||| || |||||||| ||||| || |||||||| |||||| |||||||||||||   | ||| |||      
T  3139267 ttttctacttcacaggcgttgggaggacatcagaacgcacataaggcggaacgggcattagaaaagcaacgtcaacaaaggtatgatggtagtgctttaa 3139168  T
Q  934 gtttagggcaaccttactttaacccttattttagttatccaagtactctttt 985  Q
    |||| ||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  3139167 gttttgggcagccttactttaatccttatcttagttatccaagtactctttt 3139116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 588 - 920
Target Start/End: Complemental strand, 3157228 - 3156896
Alignment:
Q  588 catgaaggagattgaacatgatcatccctcaaactctaatcccaacaagtctattgatttcgttaagctatccaaagacgattcagttctcgggtcggag 687  Q
    |||||||||||||||||||  |||  |||||||| | || ||| ||||  | ||||||||| | ||||  || ||||||||| |||||| || |||| ||    
T  3157228 catgaaggagattgaacatattcaatcctcaaacacaaaacccgacaatcccattgatttcatgaagccgtcaaaagacgatccagttcccgtgtcgaag 3157129  T
Q  688 gtgcaagaacacaactttttcggccctattcaaggtgcttcatcatannnnnnncctaataacaacaatgaagagaaagatgagaacaacaatgatgaaa 787  Q
    |||||||| ||||| ||||||||||| ||||||  || |||||| |        |||||| | |||||| |||  ||||||||||||| |||||| || |    
T  3157128 gtgcaagagcacaattttttcggccccattcaaattggttcatcgtcttgttttcctaatgataacaatcaaggaaaagatgagaacatcaatgaagaga 3157029  T
Q  788 acaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacg 887  Q
    | ||||| ||||||| |||||||||||| |  ||||| |||||| |||||||||| ||||||||||| |||||||| ||||| || |||||||| |||||    
T  3157028 agaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcacaagcgttgggaggacaccagaacgctcataaggcggaacg 3156929  T
Q  888 tgccttagaaaaacaacgtaaacaaaggtatga 920  Q
    ||| |||||||| ||||| ||||||||||||||    
T  3156928 tgctttagaaaagcaacggaaacaaaggtatga 3156896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 2022074 - 2022192
Alignment:
Q  19 aacccgtgttgaagaaaatataaacatattaatcaatgatgaagccaaaattaaattcgaaattattaccagttttgcttctttctcagtttgaaatctc 118  Q
    |||||||||||||||||||| |||||||| | ||| |||||||||||||||||  || | || |  ||||| |||||||||||||||||||||||||| |    
T  2022074 aacccgtgttgaagaaaatacaaacatatcattcattgatgaagccaaaatta--ttagcaagt--taccaattttgcttctttctcagtttgaaatcac 2022169  T
Q  119 gtttgaactacatcagaactatg 141  Q
     |||||||||||||  |||||||    
T  2022170 atttgaactacatcgaaactatg 2022192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 3139845 - 3139739
Alignment:
Q  280 cgtttcaaattttcaatcctta--gctattataattataattcaaataataacagcacaaaatatgcat-atgatttatgcttccttatttataaagata 376  Q
    |||||||||||| ||||| |||  |||||| ||||||||||||||||||||||||  |||||||||||| ||   |  |  ||||||||| |||||||||    
T  3139845 cgtttcaaattt-caatcattattgctattgtaattataattcaaataataacag--caaaatatgcatcatatatcttttttccttattcataaagata 3139749  T
Q  377 tttgcattaa 386  Q
    ||||||||||    
T  3139748 tttgcattaa 3139739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 495 - 956
Target Start/End: Original strand, 23851835 - 23852297
Alignment:
Q  495 atccttaatttttaccatggcatcccaatcctcaagggtgtctgccacttcagaagatcaaggtgattcttccaactcnnnnnnngaggtgatcatgaag 594  Q
    |||| |||||||||||||||||||  ||||||| ||  | ||| ||||||||  ||||| |||||||||| || ||||       | |  || |||||||    
T  23851835 atccctaatttttaccatggcatctgaatcctctagcatctcttccacttcacgagatcgaggtgattctacccactcaaaaaaagtgacgaacatgaag 23851934  T
Q  595 gagattgaacatgatcatccctcaaactctaatcccaacaagtctattgatttcgttaagctatccaaagacgattcagttctcgggtcggaggtgcaag 694  Q
    |||||||| ||   |||  |||||||||| || ||| ||||  ||||||||||  | |||||||| ||||| |||||||||| || |||  ||||| |||    
T  23851935 gagattgagcagattcaatcctcaaactcaaaacccgacaaacctattgattttatgaagctatcaaaagaagattcagttcccgtgtcaaaggtgaaag 23852034  T
Q  695 aacacaactttttcggccctattcaaggtgcttcatcatannnnnnncctaataacaacaatgaagagaaagatgagaacaacaatgatgaaaacaattc 794  Q
    | ||||| ||||| |||||||||| |  || |||||| |        ||||   |||||||| |||  ||||||||||||| |||||| || || |||||    
T  23852035 agcacaatttttttggccctattcgaattggttcatcgtcttgttttcctaccgacaacaatcaaggaaaagatgagaacatcaatgaagagaagaattc 23852134  T
Q  795 agattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgcctta 894  Q
    ||||||||  || |||||||| |  ||||| |||||  |||||||||| || |||||||| |||||||| ||||| || |||||||| |||||| | |||    
T  23852135 agattcaagatccttttcatgctccttttgtaagaggcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggcggaacgtacttta 23852234  T
Q  895 gaaaaacaacgtaaacaaaggtatgaaaatggtgtttt-ggtttagggcaaccttactttaac 956  Q
    ||||| ||||| ||||||||||||||  |||||||||| |||||||||||| |||||||||||    
T  23852235 gaaaagcaacggaaacaaaggtatgatgatggtgttttaggtttagggcaatcttactttaac 23852297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 5e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 796 - 974
Target Start/End: Original strand, 1760082 - 1760252
Alignment:
Q  796 gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttag 895  Q
    ||||||| ||||||||||||||  |||||||||||||||||| |||| ||||| ||||| ||||| || || |||||  ||||||| |||||||| ||||    
T  1760082 gattcaaggtctttttcatgtttattttgcaagagaaaatttactacttcacaggcgttgggagggcaccaaaatgcttataaggcggaacgtgcattag 1760181  T
Q  896 aaaaacaacgtaaacaaaggtatgaaaatggtgttttggtttagggcaaccttactttaacccttattttagttatcca 974  Q
    |||| ||||||||||||||||| |||        || ||||||||| ||||| | ||||||||||||||||||||||||    
T  1760182 aaaagcaacgtaaacaaaggtaggaa--------ttaggtttagggtaacctcattttaacccttattttagttatcca 1760252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 804 - 975
Target Start/End: Original strand, 1724450 - 1724613
Alignment:
Q  804 gtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaa 903  Q
    |||||||||||| |  ||||||||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||| |||||||| ||| |||| |||    
T  1724450 gtctttttcatgcttattttgcaagagaaaattttctacttcacaggcgttaggagggcaccaaaatgctcataaggcagaacgtgcattaaaaaagcaa 1724549  T
Q  904 cgtaaacaaaggtatgaaaatggtgttttggtttagggcaaccttactttaacccttattttagttatccaa 975  Q
    ||||||| |||||||||        ||| ||||||||  ||||| ||||||||| |||||||||||||||||    
T  1724550 cgtaaactaaggtatga--------tttaggtttaggagaacctcactttaacctttattttagttatccaa 1724613  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 745 - 921
Target Start/End: Original strand, 1738980 - 1739156
Alignment:
Q  745 aataacaacaatgaagagaaagatgagaacaacaatgatgaaaacaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacat 844  Q
    |||||||||||| ||| ||||||||||||||| ||||| || || ||    ||||||| | |||||||||| |  ||||||||| ||||||||||||| |    
T  1738980 aataacaacaataaagggaaagatgagaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttattttgcaagggaaaattttctactt 1739079  T
Q  845 cacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaggtatgaa 921  Q
    | ||||||||||| ||||| || || || |||||||| |||||||| ||  |||| |||| ||||||||||||||||    
T  1739080 cgcaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcgttgcaaaagcaacttaaacaaaggtatgaa 1739156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 796 - 911
Target Start/End: Original strand, 1744374 - 1744489
Alignment:
Q  796 gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttag 895  Q
    ||||||| |||||||||||| |  ||||||||| ||||||||||||| |||||||||||||| ||||| || || || |||||| | |||||||| |||     
T  1744374 gattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataagacggaacgtgcattac 1744473  T
Q  896 aaaaacaacgtaaaca 911  Q
    |||| |||| ||||||    
T  1744474 aaaagcaacttaaaca 1744489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 1737829 - 1737936
Alignment:
Q  212 aaaatcattttaggaaggtaaaaatattcatgcactaacctaatgggtgccaatatccttcctcacaccgtttcaaattttcaatccttagctattataa 311  Q
    |||||||||||||||||| |||||||||| ||| | ||  |||| |||| | ||||||||||||| | |||||||||| |||||||| |||||| |||||    
T  1737829 aaaatcattttaggaaggaaaaaatattcttgctcaaaattaataggtg-cgatatccttcctcatatcgtttcaaatgttcaatcc-tagctactataa 1737926  T
Q  312 ttataattca 321  Q
    |||| |||||    
T  1737927 ttattattca 1737936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 835 - 920
Target Start/End: Complemental strand, 1763566 - 1763481
Alignment:
Q  835 ttttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaggtatga 920  Q
    |||||||| |||||  |||||||||| ||||| || || |||||||| |||| ||| |||||||| ||||||||||||||||||||    
T  1763566 ttttctacttcacatacgttaggagggcatcaaaaagctcataaggcggaacatgcattagaaaagcaacgtaaacaaaggtatga 1763481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 7e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 853 - 985
Target Start/End: Complemental strand, 7491257 - 7491124
Alignment:
Q  853 ttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaggtatgaaaatggtg-ttttggtttagggcaaccttact 951  Q
    |||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||| ||||||||||   ||||| ||| |||||||||||| || |||    
T  7491257 ttaggagggcatcaaaatgcccataaggcggaacgtgcgttggaaaaacaacgtaaagaaaggtatgatgctggtgctttaggtttagggcaatctcact 7491158  T
Q  952 ttaacccttattttagttatccaagtactctttt 985  Q
    |||| |||||||| | |||| | |||||||||||    
T  7491157 ttaaaccttatttcaattattctagtactctttt 7491124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 853 - 985
Target Start/End: Complemental strand, 7498978 - 7498845
Alignment:
Q  853 ttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaggtatgaaaatggtg-ttttggtttagggcaaccttact 951  Q
    |||||||| ||||| |||||||||||||| |||||||| || ||||||||||  ||| ||||||||||   ||||| ||| |||||||||||| || |||    
T  7498978 ttaggagggcatcaaaatgcccataaggcagaacgtgcattggaaaaacaactaaaagaaaggtatgatgctggtgctttaggtttagggcaatctcact 7498879  T
Q  952 ttaacccttattttagttatccaagtactctttt 985  Q
    |||| |||||||| | |||| | |||||||||||    
T  7498878 ttaaaccttatttaaattattctagtactctttt 7498845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 962
Target Start/End: Complemental strand, 7484519 - 7484393
Alignment:
Q  837 ttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaggtatgaaaatggtg-ttttggt 935  Q
    |||||| | ||||| |||| |||| ||||| ||||||||||| || ||||||||  | ||||||||||||||| ||| |||| |   ||||| ||| |||    
T  7484519 ttctactttacaagggttaagagggcatcaaaatgcccataaagcagaacgtgcaatggaaaaacaacgtaaagaaatgtataatgttggtgctttaggt 7484420  T
Q  936 ttagggcaaccttactttaacccttat 962  Q
    ||||||||| || || |||| ||||||    
T  7484419 ttagggcaatctcaccttaaaccttat 7484393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 567
Target Start/End: Complemental strand, 7499234 - 7499168
Alignment:
Q  501 aatttttaccatggcatcccaatcctcaagggtgtctgccacttcagaagatcaaggtgattcttcc 567  Q
    ||||| ||||||||||||| ||||||  ||  | |||||||||||| ||||| ||||||||||||||    
T  7499234 aatttgtaccatggcatccaaatccttcagcatctctgccacttcacaagatgaaggtgattcttcc 7499168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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