View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5195-Insertion-4 (Length: 834)

Name: NF5195-Insertion-4
Description: NF5195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5195-Insertion-4
NF5195-Insertion-4
[»] chr7 (1 HSPs)
chr7 (8-834)||(41924563-41925389)


Alignment Details
Target: chr7 (Bit Score: 807; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 8 - 834
Target Start/End: Complemental strand, 41925389 - 41924563
Alignment:
Q  8 gaaagtcccaattgaaggttttatgccccgcttcttcatattatcgtacaattcaaggcatttttcggggtttcctgacattgcgtatactgacattaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41925389 gaaagtcccaattgaaggttttatgccccgcttcttcatattatcgtacaattcaaggcatttttcggggtttcctgacattgcgtatactgacattaag 41925290  T
Q  108 gaattgtatgtaatcacatctggtttatatcccttgctggtcatatggagaaacagattctcagcttctgttacccttccgtttttcccaattccattta 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41925289 gaattgtatgtaatcacatctggtttatatcccttcctggtcatatggagaaacagattctcagcttctgttacccttccgtttttcccaattccattta 41925190  T
Q  208 ttaaagtattgtatgtcacaatagttgcatctattccattttgtatcatttcatttaaaaatctgaacgcatctttcggtttactcagtgaacaactagc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41925189 ttaaagtattgtatgtcacaatagttgcatctattccattttgtatcatttcatttaaaaatctgaaagcatctttcggtttactcagtgaacaactagc 41925090  T
Q  308 ttcaatgagcatattatatatatctgcatttggagaaaccccgcgagttaccatatccccaagcacaatctcagcatcaagaagcttaccatctttgcac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41925089 ttcaatgagcatattatatatatctgcatttggagaaaccccgcgagttaccatatccccaagcacaatctcagcatcaagaagcttaccatctttgcac 41924990  T
Q  408 aaacagtttataagagaaccatagcttttgacattaggcttcatccctttattttccatttcctcaaaaatctcaaaacacctgacaaaatcacacgtca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41924989 aaacagtttataagagaaccatagcttttgacattaggcttcatccctttattttctatttcctcaaaaatctcaaaacacctgacaaaatcacacgtca 41924890  T
Q  508 ttccataaccattaatcaaagagttataagtctccaaagtgggagaaacacccttctctatcatcttcttaacccatctctctgcctggttcaaatcccc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41924889 ttccataaccattaatcaaagagttataagtctccaaagtgggagaaacacccttctctatcatcttcttaacccatctctctgcctggttcaaatcccc 41924790  T
Q  608 agtttcacaaaacttgttaatcagggtattgaaggtgacataactaggcttcaacccccgtttttccatttcttcagctgtcaatatacctttattcaag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41924789 agtttcacaaaacttgttaatcagggtattgaaggtgacataactaggcttcaacccccgtttttccatttcttcagctgtcaatatacctttattcaag 41924690  T
Q  708 tcacccttttggcaataagcattcaccagtatattatatgatactggacttggaaccactccattactttctagctttgccaaaacctctttggcctttt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41924689 tcacccttttggcaataagcattcaccagtatattatatgatactggacttggaaccactccattactttctagctttgccaaaatctctttggcctttt 41924590  T
Q  808 caacctttcctaccttgcaaagtccat 834  Q
    ||||||||||||||||||| |||||||    
T  41924589 caacctttcctaccttgcacagtccat 41924563  T

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