View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5195_high_6 (Length: 337)

Name: NF5195_high_6
Description: NF5195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5195_high_6
NF5195_high_6
[»] chr5 (6 HSPs)
chr5 (141-260)||(32268817-32268936)
chr5 (149-327)||(41900181-41900357)
chr5 (228-331)||(32268724-32268825)
chr5 (18-88)||(32268989-32269059)
chr5 (142-209)||(41886279-41886346)
chr5 (227-276)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (216-283)||(15091347-15091414)
chr7 (218-280)||(10168806-10168868)
chr7 (218-280)||(10176331-10176393)
chr7 (155-196)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (222-283)||(2460597-2460658)
chr4 (204-277)||(2367656-2367729)
chr4 (222-271)||(2547544-2547593)
chr4 (225-277)||(2381378-2381430)
chr4 (223-283)||(6007665-6007725)
chr4 (219-277)||(566629-566687)
chr4 (224-277)||(2525763-2525816)
chr4 (226-271)||(12124836-12124881)
chr4 (226-271)||(12126892-12126937)
chr4 (218-283)||(55907434-55907499)
chr4 (225-277)||(2486313-2486365)
chr4 (225-277)||(5035628-5035680)
chr4 (237-283)||(1547469-1547515)
chr4 (219-269)||(2376228-2376278)
chr4 (225-263)||(2380123-2380161)
chr4 (222-271)||(2472104-2472153)
chr4 (216-256)||(8445271-8445311)
chr4 (236-276)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (216-283)||(513426-513493)
chr3 (218-269)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (217-277)||(14821628-14821688)
chr6 (225-277)||(6395781-6395833)
chr6 (225-273)||(6427432-6427480)
chr6 (237-271)||(6437161-6437195)
chr6 (235-277)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (218-277)||(32152212-32152271)
chr8 (225-271)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (218-283)||(1036176-1036241)
chr2 (218-271)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (228-277)||(15837967-15838016)
chr1 (218-277)||(33161439-33161498)
chr1 (225-269)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 32268936 - 32268817
Alignment:
Q  141 tcaatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 240  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268936 tcaatgatttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtct 32268837  T
Q  241 ccaaacagttactctccatc 260  Q
    ||||||||||||||||||||    
T  32268836 ccaaacagttactctccatc 32268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 41900181 - 41900357
Alignment:
Q  149 ttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacag 248  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||  | |||||||||||||||  ||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  249 ttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatccaacccttcctcttcttcctactctctt 327  Q
    || |||||||||||||||  ||||||||| ||||||  ||| ||| ||||| ||| || ||| ||||||||||||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctctt--acaatctgtgatcaaactctcccttttcttcctactctctt 41900357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 32268825 - 32268724
Alignment:
Q  228 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctctttcacagtctatgatccaacccttcctcttcttcctactctctt 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat--tctctctcacagtctatgatccaacccttccttttcttcctactctctt 32268728  T
Q  328 gcgt 331  Q
    ||||    
T  32268727 gcgt 32268724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 32269059 - 32268989
Alignment:
Q  18 taacctagattcacaagtcgcctcacgaccactggcggcactcatctgttaactatggagtccacttcgac 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32269059 taacctagattcacaagtcgcctcacgaccactggcggcactcatctgctaactatggagtccacttcgac 32268989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 41886279 - 41886346
Alignment:
Q  142 caatgatttctggttcatatctaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 209  Q
    ||||||||  |||||  ||| |||| |||||||||||||||||||||||||||||| |||||||||||    
T  41886279 caatgattggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaac 41886346  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 12846992 - 12846943
Alignment:
Q  227 tctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgat 276  Q
    ||||||| |||| ||||| ||||| |||||||||||||||||||| ||||    
T  12846992 tctctccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 15091347 - 15091414
Alignment:
Q  216 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||| ||| |||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctct 15091414  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 10168806 - 10168868
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 280  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 10176331 - 10176393
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatc 280  Q
    |||||| ||||| ||| | |||||||||||||| |||||||||||||||  ||||||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatc 10176393  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  155 ttcatatctaccagatgagtgttgggaatgtgtcttcaaatt 196  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 2460658 - 2460597
Alignment:
Q  222 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  2460658 aaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctct 2460597  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 2367656 - 2367729
Alignment:
Q  204 gacaacaatcgatgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    |||||||| || | |||| || |||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  2367656 gacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 2547593 - 2547544
Alignment:
Q  222 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 271  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  2547593 aaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 2547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 2381378 - 2381430
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||    
T  2381378 tctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgatt 2381430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 6007725 - 6007665
Alignment:
Q  223 aatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctct 6007665  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 566687 - 566629
Alignment:
Q  219 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||| ||||||||| | |||||||||||||| |||||||||||| || ||||||||||    
T  566687 ttgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgatt 566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 2525816 - 2525763
Alignment:
Q  224 atctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    |||||||||| ||||||| |||||||| || |||||||||||| ||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 12124881 - 12124836
Alignment:
Q  226 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 271  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  226 ctctctccatcgtctccaaacagttactctccatcaccaaccgtct 271  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 1547469 - 1547515
Alignment:
Q  237 gtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctctct 1547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 2376228 - 2376278
Alignment:
Q  219 ttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 269  Q
    ||||| |||||||||||||||||||||   || ||||||||||||||||||    
T  2376228 ttgaagtctctctccatcgtctccaaaacttttctctccatcaccaaccgt 2376278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 2380123 - 2380161
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcacc 263  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2380123 tctctttccatcgtctccaaacagttactctcgatcacc 2380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 2472153 - 2472104
Alignment:
Q  222 aaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 271  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2472153 aaatctctttccatggtctccaaacagtttttctccatcaccaatcgtct 2472104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 8445271 - 8445311
Alignment:
Q  216 tgcttgaaatctctctccatcgtctccaaacagttactctc 256  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  8445271 tgcttaaagtctctctccatcgtctcaaaacagttactctc 8445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 12121009 - 12121049
Alignment:
Q  236 cgtctccaaacagttactctccatcaccaaccgtcttcgat 276  Q
    |||||| || ||||| |||||||||||||||||||||||||    
T  12121009 cgtctcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 513426 - 513493
Alignment:
Q  216 tgcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||| ||||| |||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 51763146 - 51763197
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgt 269  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| |||||    
T  51763146 cttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgt 51763197  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 14821688 - 14821628
Alignment:
Q  217 gcttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||||||| ||||||| |||||||||| ||||| ||||| |||||||| |||||||||||    
T  14821688 gcttgaaatgtctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 6395833 - 6395781
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||||||| |||||||||| ||||| |||||||||||||| | |||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 6427480 - 6427432
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgtcttc 273  Q
    ||||||||| |||||||||| ||||| |||||||||||||| |||||||    
T  6427480 tctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 6437195 - 6437161
Alignment:
Q  237 gtctccaaacagttactctccatcaccaaccgtct 271  Q
    |||||||||||||| ||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtct 6437161  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 7993319 - 7993361
Alignment:
Q  235 tcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    |||||||||||||||| ||||||||||||| |||||| |||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgatt 7993361  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 32152271 - 32152212
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    |||||| || |||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 39516915 - 39516869
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgtct 271  Q
    ||||||||||||||||||| ||| || ||| ||||||||||||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtct 39516869  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattatctct 283  Q
    ||||||||||||||| | ||||||||||||||| |||||  ||||||||  ||||||||| |||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 44575177 - 44575230
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtct 271  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  44575177 cttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtct 44575230  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 15837967 - 15838016
Alignment:
Q  228 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 33161498 - 33161439
Alignment:
Q  218 cttgaaatctctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 277  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||| ||  ||||||||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgatt 33161439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  225 tctctctccatcgtctccaaacagttactctccatcaccaaccgt 269  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

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