View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5195_low_2 (Length: 460)
Name: NF5195_low_2
Description: NF5195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5195_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Complemental strand, 34756891 - 34756461
Alignment:
| Q |
11 |
cacagacgaccagaaaataatcccaaagatgatcatctaagcgggagatttatgatgtgttacattaaggtaaaaaatggaaaggctaatcacatgattg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34756891 |
cacaaacgaccagaaaataatcccaaagatgatcatctaagcgggagatttatgatgtgttacattaaggtaaaaaatggaaaggctaatcacatgattg |
34756792 |
T |
|
| Q |
111 |
gatttataaagtgagagagaacactttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactaga |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34756791 |
gatttataa-gtgagagagaacactttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactaga |
34756693 |
T |
|
| Q |
211 |
aaaatggtgcatttccataaaagaaaaactggctccgatgaagtcttggaatacaaacaaactcagtggaccacattcacataactaccattcagaccag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34756692 |
aaaatggtgcatttccataaaagaaaaactggctccgatgaagtcttggaatacaaacaaactcagtggaccacattcacataactaccatccagaccag |
34756593 |
T |
|
| Q |
311 |
tttgttgcaaaaggagaattgaccatgcacttgaagttgatatatgatattgcattgcttctnnnnnnnnttactcagacaaaggtaattcattttttgg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34756592 |
tttgttgcaaaaggagaattgaccatgcacttgaagttgatatatgatattgcattgcttctaaaaaaaattactcagacaaaggtaattcattttttgg |
34756493 |
T |
|
| Q |
411 |
gcacaaagaaaatgaaggactaacagccagaa |
442 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
34756492 |
gcacagagaaaatgaaggactaacagccagaa |
34756461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 34755771 - 34755673
Alignment:
| Q |
130 |
aacactttcttatgagatgtaaacaaatgcagcagaagcaagaaaaagctactctgagtactttcttccttttttactagaaaaatggtgcatttccat |
228 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||| ||||| ||| |||| | ||||| |||||||||| || ||| ||||||| ||||| |||||| |
|
|
| T |
34755771 |
aacactttcttctgagatgtaaacagttgcaacagtagcaaacaaaggctattttgagtgctttcttcctattctacaagaaaaacagtgcagttccat |
34755673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University