View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5195_low_7 (Length: 318)

Name: NF5195_low_7
Description: NF5195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5195_low_7
NF5195_low_7
[»] chr3 (11 HSPs)
chr3 (19-318)||(53959154-53959441)
chr3 (250-318)||(48572984-48573054)
chr3 (248-318)||(33428489-33428561)
chr3 (246-318)||(55389523-55389597)
chr3 (248-318)||(2592061-2592133)
chr3 (273-318)||(17700542-17700587)
chr3 (273-318)||(20464093-20464138)
chr3 (281-318)||(52317011-52317048)
chr3 (248-318)||(52318371-52318443)
chr3 (248-318)||(55388070-55388142)
chr3 (249-318)||(36278950-36279021)
[»] chr5 (6 HSPs)
chr5 (245-316)||(14891199-14891272)
chr5 (273-318)||(16611752-16611797)
chr5 (248-318)||(21069286-21069358)
chr5 (249-318)||(9538103-9538174)
chr5 (249-318)||(28591168-28591239)
chr5 (278-318)||(19182979-19183019)
[»] chr7 (11 HSPs)
chr7 (248-318)||(7258272-7258344)
chr7 (250-318)||(44333138-44333208)
chr7 (247-318)||(42477377-42477450)
chr7 (247-317)||(35727695-35727767)
chr7 (253-318)||(48646051-48646118)
chr7 (279-318)||(2677840-2677879)
chr7 (276-317)||(7509526-7509567)
chr7 (273-318)||(8374938-8374983)
chr7 (273-318)||(34704933-34704978)
chr7 (244-318)||(48777249-48777325)
chr7 (286-318)||(8375637-8375669)
[»] chr2 (7 HSPs)
chr2 (248-318)||(32766293-32766365)
chr2 (249-318)||(31091581-31091652)
chr2 (253-318)||(38854791-38854858)
chr2 (283-318)||(43380614-43380649)
chr2 (279-317)||(7412122-7412160)
chr2 (260-318)||(38853764-38853824)
chr2 (241-318)||(39014995-39015074)
[»] chr4 (6 HSPs)
chr4 (244-318)||(53771103-53771179)
chr4 (249-318)||(31844720-31844791)
chr4 (286-318)||(42391942-42391974)
chr4 (246-318)||(19051285-19051359)
chr4 (281-318)||(54574457-54574494)
chr4 (274-318)||(4701790-4701834)
[»] chr1 (4 HSPs)
chr1 (273-318)||(5782438-5782483)
chr1 (249-318)||(32665824-32665895)
chr1 (245-318)||(7945608-7945683)
chr1 (249-318)||(3117647-3117718)
[»] chr6 (1 HSPs)
chr6 (243-318)||(30747991-30748068)
[»] scaffold0039 (1 HSPs)
scaffold0039 (273-317)||(79097-79141)
[»] chr8 (2 HSPs)
chr8 (249-318)||(35178858-35178929)
chr8 (278-318)||(41754849-41754889)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 53959441 - 53959154
Alignment:
Q  19 ttgacgccaaagagatgcacagagtgatgaagccattaacgaaggagattcattttccaccacaaatctgataaggacaatattcggtctcatacggcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53959441 ttgacgccaaagagatgcacagagtgatgaagccattaacgaaggagattcattttccaccacaaatctgataaggacaatattcggtctcatacggcaa 53959342  T
Q  119 cccacgaatcccctcaatatcaaaatttaaaaagctgctatgtctctatccttatgctggaaagatgacgttgaaatgaatcaattgataatgaatacta 218  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53959341 cccacgaatcc--tcaatatcaaaatttaaaaagctgctatgtctctatccttatgctggaaagatgacgttggaatgaatcaattgataatgaatacta 53959244  T
Q  219 acatttttaatcaattcataataattaattgagcaaataggcactttggtccctctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||          |||||||||||||||||||||||||||||||||    
T  53959243 acatttttaattaattcataataattaattgagcaaataggcactttggtctctctc----------tgtcacataggtctctgactcatgattaaatac 53959154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 48572984 - 48573054
Alignment:
Q  250 agcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||| |||||||||||||  |||| ||||||||| ||||||||||| |||||||| ||||||||||    
T  48572984 agcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatac 48573054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 33428561 - 33428489
Alignment:
Q  248 tgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||| | |||||| ||||||  |||| ||||||||||||||||||||| ||||||||  |||||||||    
T  33428561 tgagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatac 33428489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 55389597 - 55389523
Alignment:
Q  246 attgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| |||||||| |||||||||||||  |||| ||||||| |||||||||||||  |||||||  |||||||||    
T  55389597 attgcgcaaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatac 55389523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 2592133 - 2592061
Alignment:
Q  248 tgagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| |||||| ||||||   ||| || |||| ||||||||||||| |||||||| ||||||||||    
T  2592133 tgagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatac 2592061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 17700542 - 17700587
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||||||||||||||||||  |||||||| ||||||||||    
T  17700542 ctctgcacctcgttgtcacataggttcctgactcaggattaaatac 17700587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 20464093 - 20464138
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||||||||||||| ||||| ||| |||||||||||||||    
T  20464093 ctctgcacctcgttgtcacaaaggtccctggctcatgattaaatac 20464138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 52317011 - 52317048
Alignment:
Q  281 ctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  52317011 ctcgctgtcatataggtctctgactcatgattaaatac 52317048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 52318443 - 52318371
Alignment:
Q  248 tgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| |||||||||| ||  |||| ||| ||| |||||||||| || |||||||| ||||||||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatac 52318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 55388070 - 55388142
Alignment:
Q  248 tgagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| |||||| ||||||   ||| || |||| ||||| |||||||||||||||| ||||||||||    
T  55388070 tgagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatac 55388142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 36278950 - 36279021
Alignment:
Q  249 gagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||| ||||||   | |||| |||||||||||||||||| |||| ||| ||||||||||    
T  36278950 gagcaaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatac 36279021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 14891272 - 14891199
Alignment:
Q  245 aattgagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaat 316  Q
    |||||||||||||| ||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||    
T  14891272 aattgagcaaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaat 14891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 16611752 - 16611797
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||    
T  16611752 ctctacacctcgctgtcacataggtctctgactcaggattaaatac 16611797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 21069286 - 21069358
Alignment:
Q  248 tgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| |||||| ||| ||  |||| ||||||||||||||| |||||||||||||| ||||||||||    
T  21069286 tgagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatac 21069358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 9538174 - 9538103
Alignment:
Q  249 gagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||||||||||  |||| || |||||||||| ||||||| |||||||| ||||||||||    
T  9538174 gagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatac 9538103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 28591239 - 28591168
Alignment:
Q  249 gagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| ||||||| |||||  |||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  28591239 gagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatac 28591168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 19182979 - 19183019
Alignment:
Q  278 cacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  19182979 cacctcgctgtcacataggtctctgactcaggattaaatac 19183019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 7258272 - 7258344
Alignment:
Q  248 tgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||| || ||||| ||||||||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatac 7258344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 44333138 - 44333208
Alignment:
Q  250 agcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||| |||||||||||||  |||| ||||||| ||||||||||||| |||||||||||||||||||    
T  44333138 agcaaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatac 44333208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 42477377 - 42477450
Alignment:
Q  247 ttgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||  || |||||||| |  |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  42477377 ttgagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatac 42477450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 35727695 - 35727767
Alignment:
Q  247 ttgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaata 317  Q
    ||||||||| || ||||||| |||||  |||| ||||||| ||||||||||||| |||||||| |||||||||    
T  35727695 ttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaata 35727767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 48646051 - 48646118
Alignment:
Q  253 aaataggcactttggtccctctcta--cacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||| |||||||||||||  |||  ||||||| ||||||||||||| |||||||| ||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatac 48646118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 2677879 - 2677840
Alignment:
Q  279 acctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  2677879 acctcgttgtcacaaaggtctatgactcatgattaaatac 2677840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 7509567 - 7509526
Alignment:
Q  276 tacacctcgttgtcacataggtctctgactcatgattaaata 317  Q
    ||||||||||||||||| |||||| ||| |||||||||||||    
T  7509567 tacacctcgttgtcacaaaggtctttgattcatgattaaata 7509526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 8374938 - 8374983
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||||| ||||||||||||||||||||||  |||||||||    
T  8374938 ctctgcacctcgctgtcacataggtctctgactcagaattaaatac 8374983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 34704933 - 34704978
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||||||||||||| ||| |||||||||| ||||||||||    
T  34704933 ctctgcacctcgttgtcacaaaggcctctgactcaggattaaatac 34704978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 48777249 - 48777325
Alignment:
Q  244 taattgagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||||||| |||||| ||| ||   ||| || |||| ||||||||| ||| |||||||||||||||||||    
T  48777249 taattgagcaaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatac 48777325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 8375669 - 8375637
Alignment:
Q  286 tgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||||| |||||||||||||||||||    
T  8375669 tgtcacataggtccctgactcatgattaaatac 8375637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 32766365 - 32766293
Alignment:
Q  248 tgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| |||||||||||||  |||| ||||||||||||||||||||| |||||||| ||||||||||    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatac 32766293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 31091652 - 31091581
Alignment:
Q  249 gagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||||||||||  |||| ||||| | ||||||||||||| |||||||| ||||||||||    
T  31091652 gagcaaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatac 31091581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 38854791 - 38854858
Alignment:
Q  253 aaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||| |||||||||||||  |||||||| ||||||||| | |||||| ||||||| ||||||||||    
T  38854791 aaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatac 38854858  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 43380614 - 43380649
Alignment:
Q  283 cgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||||||||||||||||||||||    
T  43380614 cgttgtcacaaaggtctctgactcatgattaaatac 43380649  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 7412122 - 7412160
Alignment:
Q  279 acctcgttgtcacataggtctctgactcatgattaaata 317  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  7412122 acctcgttgtcacatagatctctgactcaagattaaata 7412160  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 38853764 - 38853824
Alignment:
Q  260 cactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||||  |||||||| || |||||| | |||||||||||||| ||||||||||    
T  38853764 cactttggtccctgactctacacttcattgtcataaaggtctctgactcaggattaaatac 38853824  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 39014995 - 39015074
Alignment:
Q  241 aattaattgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||||||||  |||||| ||||||  |||| ||||||| || ||||||| ||  ||||||| ||||||||||    
T  39014995 aattaattgagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatac 39015074  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 53771179 - 53771103
Alignment:
Q  244 taattgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||||| | |||||| ||||||  |||| ||||||||||||||||||||| ||||||||  |||||||||    
T  53771179 taattgagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatac 53771103  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 31844720 - 31844791
Alignment:
Q  249 gagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||| ||||||  |||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  31844720 gagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatac 31844791  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 42391974 - 42391942
Alignment:
Q  286 tgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||||||||||||||||||||||||    
T  42391974 tgtcacataggtctctgactcatgattaaatac 42391942  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 19051359 - 19051285
Alignment:
Q  246 attgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| | |||||| ||||||  ||||||||||||||| |||| ||||| |||||||  ||||||||||    
T  19051359 attgagcaaatggtcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatac 19051285  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 54574457 - 54574494
Alignment:
Q  281 ctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  54574457 ctcgctgtcacataggtctctgactcaggattaaatac 54574494  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 4701790 - 4701834
Alignment:
Q  274 tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||||||| ||||||| |||||| ||||| ||||||||||||    
T  4701790 tctacacctcgctgtcacaaaggtctatgacttatgattaaatac 4701834  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 5782438 - 5782483
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  5782438 ctctgcacctcgctgtcacataggtctctgactcatgattaaatac 5782483  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 32665895 - 32665824
Alignment:
Q  249 gagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||| ||||||   ||| || |||| |||||||||||||||||||||||||||||||||    
T  32665895 gagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatac 32665824  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 7945683 - 7945608
Alignment:
Q  245 aattgagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||||||  || ||||||||||  |||| ||||||| ||||||||||||  |||||||| ||||||||||    
T  7945683 aattgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatac 7945608  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 3117647 - 3117718
Alignment:
Q  249 gagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| || ||| ||||||  |||| ||| ||||| ||||| |||||||||||||| ||||||||||    
T  3117647 gagcaaatagtcattttagtccctaactcttcacatcgttatcacaaaggtctctgactcaagattaaatac 3117718  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 30747991 - 30748068
Alignment:
Q  243 ttaattgagcaaataggcactttggtccctc--tctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||| ||||||||||| |||||| ||||||   ||| ||||||| ||||||||||||| |||||| | ||||||||||    
T  30747991 ttaaatgagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatac 30748068  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 79097 - 79141
Alignment:
Q  273 ctctacacctcgttgtcacataggtctctgactcatgattaaata 317  Q
    |||| ||||||| |||||||||||||  |||||||||||||||||    
T  79097 ctctgcacctcgctgtcacataggtccttgactcatgattaaata 79141  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 35178929 - 35178858
Alignment:
Q  249 gagcaaataggcactttggtccct--ctctacacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    |||||||||| |||||||||||||  |||| ||| ||| ||||| || |||| |||||||| ||||||||||    
T  35178929 gagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatac 35178858  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 41754889 - 41754849
Alignment:
Q  278 cacctcgttgtcacataggtctctgactcatgattaaatac 318  Q
    ||||||| |||||||||| ||||||||||| ||||||||||    
T  41754889 cacctcgctgtcacatagatctctgactcaggattaaatac 41754849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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