View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196-Insertion-2 (Length: 778)
Name: NF5196-Insertion-2
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 44 - 514
Target Start/End: Complemental strand, 47708216 - 47707746
Alignment:
| Q |
44 |
cattttaaattcgaacaaagaagtagagagagcaagcaacccatcatttaagaagcaatggcttatggacaggagatattacttacaacaacagaaatta |
143 |
Q |
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| T |
47708216 |
cattttcaattcgaacaaagaagtagagagagcaagcaacccatcatttaagaagcaatggcttattgacatgagatattacttacaacaacagaaatta |
47708117 |
T |
|
| Q |
144 |
attttgttgcgtgataaaatttcaatgatatctgatactacttcatccctaatcacacattccaaaattgcatcagcaatctcaatactaacatctttca |
243 |
Q |
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| T |
47708116 |
attttgttgtgtgataaaatttcaatgatatctgatactacttcatccctaatcacacattccaaaattgcatcagcaatctcaatactaacatctttca |
47708017 |
T |
|
| Q |
244 |
cctcagtcttaaattcactccattcattaattgaatccaagtaatccaaattcagcaagttacttagatttctctcataatttccacctctttcgctcca |
343 |
Q |
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| T |
47708016 |
cctcggtcttaaattcactccattcattaattgaatccaagtaatccaaattcagcaagttacttagatttctctcataatttccacctctttcactcca |
47707917 |
T |
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| Q |
344 |
ttcttttgtcctctcccataacatcttccccaacttttcggcacccatgaattgcttacaatctttatctggaagactttttgcaagttctctcacacaa |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| |
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| T |
47707916 |
ttcttttgtcctctcccataacatcttccccaacttttcggcacccatgaattgcttacaatctttttctggaagattttttgtaagttctctcacacaa |
47707817 |
T |
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| Q |
444 |
tcaaataacaacctctttgtcttgtgcaacacccttttagatttcatcacatgagaaacatcatgcccaag |
514 |
Q |
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| T |
47707816 |
tcaaataacaacctctttgtcttgtgcaacacccttttagatttcatcacatgagaaacatcatgcccaag |
47707746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 512 - 778
Target Start/End: Complemental strand, 47707694 - 47707400
Alignment:
| Q |
512 |
aagtgaactaaatagagcagctgatagtagagattcctcggtgaatttcttcggcacaaccatgccgtaaacacagacattcttgttcaatgtttcatgt |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
47707694 |
aagtgaactaaatagagcagctgatagtagagattcctcggtgaatttcttcggcacaaccacgccgcaaacacagacattcttgttcaatgtttcatgt |
47707595 |
T |
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| Q |
612 |
gtcacacagactgatatataatcaaaaggagtaattaattc--------------------gtctcttgaggttataaagtcaaattctaaccaattttt |
691 |
Q |
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| T |
47707594 |
gtcacacagactgatacataatcaaaaggagtaattaattcgtcttagagattataaattcgtctcttgaggttataaagtcaaattctaaccaattttt |
47707495 |
T |
|
| Q |
692 |
taatttaacaaatgcag-------nnnnnnnnnctattcttagattatgaaaatgtaaaagaactaaact-acttaatttaccttcttctataca |
778 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
47707494 |
taatttaacaaatgcagaaaagaaaaaaaaaaactattcttagattatgaaaatgcaaaagaactaaactaacttaatttaccttcttctataca |
47707400 |
T |
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