View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196-Insertion-3 (Length: 778)
Name: NF5196-Insertion-3
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Complemental strand, 34059164 - 34058520
Alignment:
| Q |
8 |
acaacttccaacttaatatttttactttaagatgatgaaatgaaagctagaaggtgatactagtttagaaggccaaggaaggtgagtaattcatatttag |
107 |
Q |
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| T |
34059164 |
acaacttccaacttaatatttttactttaagatgatgaaatgaaagctagaaggtgatactagtttagaaggccaaggaaggtgagtaattcatatttag |
34059065 |
T |
|
| Q |
108 |
ttgctaagtgaaatatttttggtttgcttgtgagtaacttaagacaatggtgtaggtatttatagtcaaagtggaagagtaaaaagttcatctcatggtt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
34059064 |
ttgctaagtgaaatatttttggtttgcttgtgagtaacttaagacaagggtgtaggtatttatagtgaaagtggaagagtaaaaagttcatctcatcgtt |
34058965 |
T |
|
| Q |
208 |
aaaattagtgcaaagtgtcattcaattaagctagtcatgtattattaagataagaccaaatttattatttaatagattcattgcacacatgcttaattaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34058964 |
aaaattagtgcaaagtgtcattcaattaagctagtcatatcctattaagataagaccaaatttattatttaatagattcattgcacatatgcttaattaa |
34058865 |
T |
|
| Q |
308 |
tatatattttttattctaatttcatgcatctagttactatattatcagttacgaacggatgatactcagtt---cnnnnnnnnnnnnnnnntgcatacca |
404 |
Q |
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| T |
34058864 |
tatatattttttattctaatttcat--------ttactatattatcagttacgaacagatgatactcaattaaaaaaaaaaaaaaataaattgcatacca |
34058773 |
T |
|
| Q |
405 |
tcacacaccaccacccaccatgagaacttcaacaaaatgcaaaatgtgaaaaccagtccggtccaacaaaccacgggttcacaggttgatctgaaaaccc |
504 |
Q |
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| T |
34058772 |
tcacacaccaccacccaccatgagagcttcaacaaaatgcaaaatgtgaaaaccagtccggtccaacaaaccacgggttcacaggttgatctgaaaaccc |
34058673 |
T |
|
| Q |
505 |
agccggttcaagtgcacaaccggatcttatatgcaatcaacaattcaaaataaaatatatttaattaattaaataattttcgcggccactttagtttgaa |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34058672 |
agccggttcaagtgcacaaccggatcttatatgcaatcaacaattcaaaataaaatatatttaattaattaaataattttcgcggccactttagtttgaa |
34058573 |
T |
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| Q |
605 |
ttttaataatcacttttctatattcaacacacttcaaagttcaaaattaatca |
657 |
Q |
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| T |
34058572 |
ttttaataatcacttttctatattcaacacacttcaaagttcaaaattaatca |
34058520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 708 - 778
Target Start/End: Complemental strand, 34058469 - 34058399
Alignment:
| Q |
708 |
cactgtatgaaaaactttcaaatcaacattgaatcttaaaccctaaaaactatagcactgaaaaatttcat |
778 |
Q |
| |
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| T |
34058469 |
cactgtatgaaaaactttcaaatcaacattgaatcttaaaccctaaaaactatagcactgaaaattttcat |
34058399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 114 - 314
Target Start/End: Original strand, 24235966 - 24236167
Alignment:
| Q |
114 |
agtgaaatatttttggtttgcttgtgagtaacttaagacaatggtgtaggtatttatagtcaaagtggaagagtaaaaagttcatctcatggttaaaatt |
213 |
Q |
| |
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|||| ||| |||||||||| ||| ||||||| || || || |||||| |||||||||| ||| || |||||||| ||||| |||| |||| |||||| |
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| T |
24235966 |
agtggaatgtttttggttttcttctgagtaaattgagcaaagagtgtag-tatttatagtaaaaatgaaagagtaagaagttaatcttatggcgaaaatt |
24236064 |
T |
|
| Q |
214 |
agtgcaaagtgtcattcaattaagctagtcatgtatt--attaagataagaccaaatttattatttaatagattcattgcacacatgcttaattaatata |
311 |
Q |
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||||||| ||| || ||||||||| ||| || ||||| ||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
24236065 |
agtgcaatgtggcactcaattaagttagccaggtatttacttaagataagatcaaatttattattggttgagttcattgcacatgtgcttaattaatata |
24236164 |
T |
|
| Q |
312 |
tat |
314 |
Q |
| |
|
||| |
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|
| T |
24236165 |
tat |
24236167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 16838619 - 16838651
Alignment:
| Q |
314 |
ttttttattctaatttcatgcatctagttacta |
346 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16838619 |
ttttttattctaatttcatgcatctagttacta |
16838651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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