View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5196-Insertion-4 (Length: 664)
Name: NF5196-Insertion-4
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196-Insertion-4 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Original strand, 52000846 - 52001501
Alignment:
| Q |
8 |
atgcatggttagctctgctatatatgcataatcctaagttttggttgacggttgaatttagtaataactcgtccacattggtcaagttgtagcacctatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52000846 |
atgcatggttagctctgctatatatgcataatcctaagttttggttgacggttgaatttagtaataactcgtccacattggtcaagttgtagcacctatt |
52000945 |
T |
|
| Q |
108 |
acacaaataaatgtataaatctgaattaatatactaggcctttaggcacaagtatagtagcagttataactaaaaacttgaattaatgacataattccta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52000946 |
acacaaataaatgtataaatctgaattaatatactaggcctttaggcacaagtatagtagcagttataactaaaaacttgaattaatgagataattccta |
52001045 |
T |
|
| Q |
208 |
catataggagnnnnnnnngttgaattgtagtaaatcacaagaaagaccactgtttgatcaaagattgaatgttataaaattttgaaattttcaaaattta |
307 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
52001046 |
catatagga-aaaaaaaagttgaattgtagtaaattacaagaaagaccactgcttgatcaaagattggatgttataaaattttgacattttcaaaattta |
52001144 |
T |
|
| Q |
308 |
aaataggaggttaaattttggatcaccgatgtggttgtcgccaaatggtgacttcacacaaccctgtgatttgtaacttcacacgacccaaatttgaatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52001145 |
aaataggaggttaaattttggatcaccgatgtggttgtcgccaaatggtgacttcacacaaccctgtgatttgtaacttcacacgacccaaatttgaatg |
52001244 |
T |
|
| Q |
408 |
acaaaattcaaataggaaataaaaatgtggaattgcagcaaaactacaagaaacactaagtattatatatgtgaaacaattaaattcaataaacatacct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52001245 |
acaaaattcaaataggaaataaaaatgtggaattgcagcaaaactacaagaaacactaagtattatatatgtgaaacaattaaattcaataaacatacct |
52001344 |
T |
|
| Q |
508 |
ctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaatccacttag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52001345 |
ctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaatccacttag |
52001444 |
T |
|
| Q |
608 |
aagtagttcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaag |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52001445 |
aagtagttcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaag |
52001501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 378 - 637
Target Start/End: Complemental strand, 51988419 - 51988159
Alignment:
| Q |
378 |
ttgtaacttcacacgacccaaatttgaatgacaaaattcaaata-ggaaataaaaatgtggaattgcagcaaaactacaagaaacactaagtattatata |
476 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| ||||||| |||| ||||| ||||| ||||||||| | ||||| || ||||| || ||||| |||| |
|
|
| T |
51988419 |
ttgtgacttcacacaacccaaattcaaatgtcaaaattgaaatttggaaagaaaaaggtggaattgtaacaaaatcactagaaaaaccaagtacaatatc |
51988320 |
T |
|
| Q |
477 |
tgtgaaacaattaaattcaataaacatacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctt |
576 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
51988319 |
tgctgaacaattaaattgaatgaacatacctctaatatggaagtgtccaatgttccaaaatattttataaattcttcctctgtcaaccagaagcaatctt |
51988220 |
T |
|
| Q |
577 |
taagccgaatcacatttggaaatccacttagaagtagttcaagagagtgagcattcatttt |
637 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
51988219 |
taagccgaatcacatttgaaaacccactaagaagtagttcaagaaagtgaccattcatttt |
51988159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 500 - 664
Target Start/End: Original strand, 52011202 - 52011366
Alignment:
| Q |
500 |
acatacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaat |
599 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||| || |||||||||||||||| ||| |||||||||||||||||||| | | ||||| |
|
|
| T |
52011202 |
acatacctctaatatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgagtaggaaac |
52011301 |
T |
|
| Q |
600 |
ccacttagaagtagttcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaag |
664 |
Q |
| |
|
||||| ||||||||||||||| || || |||||||||||| |||||||| | |||||||||||| |
|
|
| T |
52011302 |
ccactcagaagtagttcaagaaagcgacaattcatttttctcgaatcacataccaacgcgctaag |
52011366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 463
Target Start/End: Original strand, 51998643 - 51998750
Alignment:
| Q |
355 |
gtgacttcacacaaccctgtgatttgtaacttcacacgacccaaatttgaatgacaaaattcaaataggaaataaaaatgtggaattgcagcaaaactac |
454 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| |||||| ||| |||||||||| ||||||||| |||||| |||||||| ||||||| || |
|
|
| T |
51998643 |
gtgacttcacacaaccttgtga-ttgtaactccacacattccaaatccgaaagacaaaattccaataggaaagaaaaatatggaattgtagcaaaattag |
51998741 |
T |
|
| Q |
455 |
aagaaacac |
463 |
Q |
| |
|
||||||||| |
|
|
| T |
51998742 |
aagaaacac |
51998750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 51998876 - 51998818
Alignment:
| Q |
11 |
catggttagctctgctatatatgcataatcctaagttttggttgacggttgaatttagt |
69 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
51998876 |
catggttggctgtgctatatatgcataatccttagttttggttgatggttgaatttagt |
51998818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 52010923 - 52010973
Alignment:
| Q |
71 |
ataactcgtccacattggtcaagttgtagcacctattacacaaataaatgt |
121 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
52010923 |
ataactcgtccacactggtcaagttgcagcacctattccacaaataaatgt |
52010973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 51998359 - 51998424
Alignment:
| Q |
71 |
ataactcgtccacattggtcaagttgtagcacctattacacaaataaatgtataaatctgaattaa |
136 |
Q |
| |
|
|||| |||||||||||| | |||||| || ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
51998359 |
ataattcgtccacattgctgaagttgcagaacctattccacaaataaatgtataaacatgaattaa |
51998424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 658
Target Start/End: Original strand, 11749011 - 11749169
Alignment:
| Q |
500 |
acatacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaatcacatttggaaat |
599 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||| || |||||||||| ||||| ||| ||||| |||||||||| || | | ||| | |
|
|
| T |
11749011 |
acatacctctaccgtggaagtgtccaacactccaaaatatgcagtgaattcttcctatgtcaaccaggagcagtctttaagccaaacatgagtaggagac |
11749110 |
T |
|
| Q |
600 |
ccacttagaagtagttcaagagagtgagcattcatttttcttgaatcacaaagcaacgc |
658 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
11749111 |
ccacttagaagtacttcaagaaagcgagcattcatttttcctgaatcgcaaagcaacgc |
11749169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University