View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5196-Insertion-5 (Length: 582)

Name: NF5196-Insertion-5
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5196-Insertion-5
NF5196-Insertion-5
[»] chr8 (11 HSPs)
chr8 (9-454)||(13579356-13579801)
chr8 (468-582)||(13579895-13580009)
chr8 (305-453)||(13579133-13579281)
chr8 (476-582)||(33746977-33747083)
chr8 (487-580)||(22200571-22200664)
chr8 (477-537)||(8387460-8387520)
chr8 (476-564)||(10292167-10292255)
chr8 (539-582)||(13749150-13749193)
chr8 (476-582)||(34694575-34694682)
chr8 (476-564)||(2618299-2618387)
chr8 (476-564)||(42328117-42328205)
[»] chr7 (8 HSPs)
chr7 (305-439)||(22817164-22817298)
chr7 (476-582)||(21574102-21574208)
chr7 (476-564)||(42913513-42913601)
chr7 (476-565)||(28647081-28647170)
chr7 (378-454)||(45648930-45649007)
chr7 (476-564)||(21217833-21217921)
chr7 (517-581)||(11909995-11910059)
chr7 (323-403)||(34350295-34350375)
[»] chr3 (16 HSPs)
chr3 (305-438)||(22242921-22243053)
chr3 (482-581)||(4252402-4252501)
chr3 (360-454)||(53067705-53067800)
chr3 (475-564)||(21363052-21363141)
chr3 (484-562)||(26158922-26159000)
chr3 (476-564)||(10083819-10083907)
chr3 (324-454)||(22243054-22243185)
chr3 (319-453)||(46753872-46754007)
chr3 (475-564)||(18176886-18176975)
chr3 (475-564)||(49258261-49258350)
chr3 (476-564)||(10190742-10190830)
chr3 (378-441)||(46753272-46753335)
chr3 (477-544)||(48105006-48105073)
chr3 (475-537)||(4048086-4048148)
chr3 (475-564)||(33398467-33398556)
chr3 (476-564)||(32151533-32151621)
[»] chr1 (12 HSPs)
chr1 (489-575)||(16899601-16899687)
chr1 (323-441)||(23729886-23730003)
chr1 (475-575)||(9926145-9926245)
chr1 (477-544)||(37351454-37351521)
chr1 (503-564)||(12876963-12877024)
chr1 (476-564)||(9500355-9500443)
chr1 (476-568)||(1486523-1486617)
chr1 (356-454)||(23729463-23729561)
chr1 (483-561)||(8779743-8779821)
chr1 (518-568)||(37047097-37047147)
chr1 (368-441)||(33082527-33082600)
chr1 (484-544)||(1379026-1379086)
[»] chr2 (10 HSPs)
chr2 (305-441)||(15285576-15285711)
chr2 (476-557)||(14486941-14487022)
chr2 (334-453)||(22482823-22482943)
chr2 (305-425)||(15285066-15285187)
chr2 (475-568)||(19174868-19174960)
chr2 (360-441)||(22482209-22482289)
chr2 (476-568)||(8192352-8192443)
chr2 (405-450)||(23857859-23857905)
chr2 (476-557)||(28194138-28194219)
chr2 (475-544)||(41329971-41330040)
[»] chr5 (9 HSPs)
chr5 (475-565)||(39459404-39459493)
chr5 (476-550)||(4603900-4603974)
chr5 (475-529)||(10837440-10837494)
chr5 (520-564)||(23290705-23290749)
chr5 (475-581)||(36895517-36895623)
chr5 (485-542)||(23016712-23016769)
chr5 (475-568)||(24158165-24158258)
chr5 (475-564)||(34310251-34310340)
chr5 (475-543)||(9659310-9659378)
[»] chr4 (6 HSPs)
chr4 (476-543)||(9978509-9978576)
chr4 (475-531)||(46759102-46759158)
chr4 (476-564)||(54127342-54127430)
chr4 (505-550)||(4064983-4065028)
chr4 (476-549)||(27528795-27528868)
chr4 (476-544)||(27574447-27574515)
[»] chr6 (4 HSPs)
chr6 (485-556)||(8479414-8479485)
chr6 (476-550)||(5360071-5360145)
chr6 (475-564)||(9690637-9690726)
chr6 (483-563)||(28741848-28741928)


Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 454
Target Start/End: Original strand, 13579356 - 13579801
Alignment:
Q  9 cttgtatgttgcaaccaggaagatgaagaaataatccatggaatccacctaaaatagatctgcataatctccgatagcaacttagtcggccattggtgta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13579356 cttgtatgttgcaaccaggaagatgaagaaataatccatggaatccacctaaaatagatctgcataatctccgatagcaacttagtcggccattggtgta 13579455  T
Q  109 gtcataaaaaaccgtcatcacacccaaacaagcgttggaacgacatcgtcgaatgggaaccctccacaccgacattaagataggttgcaacataggtgcc 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13579456 gtcataaaaaaccgtcatcacacccaaacaagcgttggaacggcatcgtcgaatgggaaccctccacaccgacattaagataggttgcaacataggtgcc 13579555  T
Q  209 ggaatttctgttgacaacgcggtacgacgagtatggagatttcggacttgttgcgtcgtcggagagtggagttttttctgttgagaggaaaacaaaggtg 308  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  13579556 ggaatttccgttgacaacgcggtacgacgagtatggagatttcggacttgttgcgtcaccggagagtggagttttttctgttgagaggaaaacaaaggta 13579655  T
Q  309 tgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13579656 tgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgc 13579755  T
Q  409 taatgcacaccttctaaaatcaaagtgggtgtgcttagcattcccc 454  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  13579756 taatgcacaccttctaaaatcaaagtgggtgtgattagcattcccc 13579801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 468 - 582
Target Start/End: Original strand, 13579895 - 13580009
Alignment:
Q  468 gacacactaaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagc 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13579895 gacacactaaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagc 13579994  T
Q  568 ttggtatgaacttgc 582  Q
    | |||||||||||||    
T  13579995 tcggtatgaacttgc 13580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 305 - 453
Target Start/End: Complemental strand, 13579281 - 13579133
Alignment:
Q  305 ggtgtgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtaga 404  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||| |||||     
T  13579281 ggtgtgggccgggcataaaaattactttaaaggacaagtgtttaatgacctttagaaaagagagaaggggtg-tttttgtccaaaccaaatggatgtagg 13579183  T
Q  405 atgctaatgcacaccttctaaaatcaaagtgggtgtg-cttagcattccc 453  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13579182 atgctaatgcacaccttctaaaatcaaagtgggtgtgtattagcattccc 13579133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 582
Target Start/End: Complemental strand, 33747083 - 33746977
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtatg 575  Q
    ||||||| |||||||||| ||||| | | ||||||||  ||||||||  ||||||||||||| |||||||||||||||| | ||| ||||||||  ||||    
T  33747083 aaaactcggtatccgatccaaggatcgactaatccgagagaaccaattccaccgtccacttgcgggggctccgttctaaaccagaacaaagctttatatg 33746984  T
Q  576 aacttgc 582  Q
    || ||||    
T  33746983 aatttgc 33746977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 580
Target Start/End: Original strand, 22200571 - 22200664
Alignment:
Q  487 tccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtatgaactt 580  Q
    ||||||||||||||| |||||| ||| || |||||||  || ||| |||||  ||||||||||||||||| |||||||||||  ||||||||||    
T  22200571 tccgatctaaggaccgattaattcgagggtaccaatcctactgtctacttgcaggggctccgttctaagccagagcaaagctctgtatgaactt 22200664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 8387460 - 8387520
Alignment:
Q  477 aaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttg 537  Q
    ||||||||||||||||||||||| ||| |||||||| |  | ||||| |||||||||||||    
T  8387460 aaactcagtatccgatctaaggatcaactaatccgaggagatcaatcccaccgtccacttg 8387520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 10292255 - 10292167
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||| ||||| ||| | ||| |||||||| || ||||||| ||||| |||||||||||||| |||||  |||| |||||||    
T  10292255 aaaactcggtattcgatccaagaatcaactaatccgaagggaccaatcccaccgcccacttgtgggggccccgtttaaagccagagcaa 10292167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 582
Target Start/End: Complemental strand, 13749193 - 13749150
Alignment:
Q  539 gggggctccgttctaagctagagcaaagcttggtatgaacttgc 582  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||    
T  13749193 gggggccccgttctaagccagagcaaagctttgtatgaacttgc 13749150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 582
Target Start/End: Original strand, 34694575 - 34694682
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggct-ccgttctaagctagagcaaagcttggtat 574  Q
    |||||||  ||||||||| ||||||  | ||||| || || ||||||| ||||||||||| | ||||| | |||||||||||  ||||||||||| ||||    
T  34694575 aaaactcgttatccgatccaaggacagactaatctgaggggaccaatcccaccgtccactagagggggattccgttctaagccggagcaaagctttgtat 34694674  T
Q  575 gaacttgc 582  Q
    ||| ||||    
T  34694675 gaatttgc 34694682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 2618387 - 2618299
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| | |||||||| ||| | | | |||||||| || ||||||| ||||| ||||||| ||||||||||||  |||| |||||||    
T  2618387 aaaactcggaatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgcgggggctccgtttaaagccagagcaa 2618299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 42328205 - 42328117
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||||||||| ||| | | | |||| ||| || ||||||| || ||||||||||||||||| |||||  |||| |||||||    
T  42328205 aaaactcggtatccgatccaagaatcgactaattcgaggggaccaatcccatcgtccacttgtgggggccccgtttaaagccagagcaa 42328117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 22817164 - 22817298
Alignment:
Q  305 ggtgtgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtaga 404  Q
    ||||| || ||| ||||||||||||||||||||||| ||||||||||||  ||| |||||||| |||||||  |||||||||||| ||||| ||||||      
T  22817164 ggtgttggtcagacatgaaaattactttaaaggacatgtgtttaatgacaattaaaaaagagagaaggggtattttttgtccaaatcaaataggtgtatg 22817263  T
Q  405 atgctaatgcacaccttctaaaatcaaagtgggtg 439  Q
    |||| ||||||||||||||||||| ||||||||||    
T  22817264 atgccaatgcacaccttctaaaattaaagtgggtg 22817298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 476 - 582
Target Start/End: Original strand, 21574102 - 21574208
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtatg 575  Q
    ||||||| |||||||||| ||||||| | |||||||| || ||||||||||||| | |||||||||||| |||||||||||  | ||||||||  |||||    
T  21574102 aaaactcggtatccgatccaaggaccgactaatccgaggggaccaatctcaccgcctacttgtgggggccccgttctaagcctgggcaaagctctgtatg 21574201  T
Q  576 aacttgc 582  Q
     ||||||    
T  21574202 gacttgc 21574208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 42913513 - 42913601
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||||||||||||| | ||| |||||||| || ||||||| ||||||||||||| |||||| |||||  |||| |||||||    
T  42913513 aaaactcggtatccgatctaagaatcaactaatccgaggggaccaatcccaccgtccacttgcgggggccccgtttaaagccagagcaa 42913601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 28647170 - 28647081
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaa 565  Q
    |||||||  ||||||||| ||||||  | |||| ||| |||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||    
T  28647170 aaaactcgatatccgatccaaggacagactaattcgagggaaccaatcccaccgcccacttgtgggggccccgttataagccagagcaaa 28647081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 45649007 - 45648930
Alignment:
Q  378 tttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg-cttagcattcccc 454  Q
    |||||||||||| ||| | ||||||| |||||| | |||||||||||||||  |||||||||||  ||||||||||||    
T  45649007 tttttgtccaaatcaattaggtgtaggatgctactacacaccttctaaaattgaagtgggtgtgtattagcattcccc 45648930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 21217833 - 21217921
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||||||||| ||| | ||| |||||||| || | ||||| ||||| |||||||||||||  |||||  ||||||||||||    
T  21217833 aaaactcggtatccgatccaagaatcaactaatccgaggggatcaatcccaccgcccacttgtggggggcccgtttaaagctagagcaa 21217921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 581
Target Start/End: Original strand, 11909995 - 11910059
Alignment:
Q  517 accaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtatgaacttg 581  Q
    ||||||| |||||||||||||| |||||  ||||  |||||||| |||||||| ||||| |||||    
T  11909995 accaatcccaccgtccacttgtaggggcctcgtttaaagctagaacaaagcttcgtatggacttg 11910059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 34350295 - 34350375
Alignment:
Q  323 aaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtag 403  Q
    |||||||| ||||||||| ||||||||||||  ||| ||||| || |  ||||  |||||||||||| |||||| ||||||    
T  34350295 aaattactataaaggacatgtgtttaatgacaattaaaaaagtgagatagggtattttttgtccaaagcaaatgagtgtag 34350375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 438
Target Start/End: Complemental strand, 22243053 - 22242921
Alignment:
Q  305 ggtgtgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtaga 404  Q
    |||||||||||||||||||| |||| ||| ||||||  |||||||| ||  ||| |||||| |||| ||||  |||||||||||| ||| | |||||||     
T  22243053 ggtgtgggccaggcatgaaa-ttacattagaggacatatgtttaataacaattaaaaaagataaaaagggtattttttgtccaaatcaattaggtgtagg 22242955  T
Q  405 atgctaatgcacaccttctaaaatcaaagtgggt 438  Q
    ||||||||||||| ||||||||||  ||||||||    
T  22242954 atgctaatgcacatcttctaaaattgaagtgggt 22242921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 482 - 581
Target Start/End: Original strand, 4252402 - 4252501
Alignment:
Q  482 cagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtatgaacttg 581  Q
    |||||||||||| ||||| | | |||||||| || ||||||| |||||||||||||||||||  ||||||||| | |||| ||||||| ||||| |||||    
T  4252402 cagtatccgatccaaggatcgactaatccgaggggaccaatcccaccgtccacttgtgggggggccgttctaaaccagagtaaagctttgtatggacttg 4252501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 360 - 454
Target Start/End: Original strand, 53067705 - 53067800
Alignment:
Q  360 aaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg-cttagcattcccc 454  Q
    |||||||||||||||| ||||||||| |||  | ||| |||||| |||||||||||||||||||||||| |  |||||||||  ||||||||||||    
T  53067705 aaaagagaaaaggggtaatttttgtcaaaagtagatgagtgtaggatgctaatgcacaccttctaaaattatggtgggtgtgtattagcattcccc 53067800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 564
Target Start/End: Complemental strand, 21363141 - 21363052
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||| |||||||||| ||| | | |||||||||| |||||||||| ||||| ||||||| ||||||||||||  |||| |||||||    
T  21363141 taaaactcggtatccgatccaagaatcgattaatccgagggaaccaatcccaccgcccacttgcgggggctccgtttaaagccagagcaa 21363052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 562
Target Start/End: Complemental strand, 26159000 - 26158922
Alignment:
Q  484 gtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagc 562  Q
    |||||||||| ||||||| | |||||||| || | ||||| ||||| ||||||| |||||||||||||||||| |||||    
T  26159000 gtatccgatccaaggaccgactaatccgaggggatcaatcccaccgcccacttgcgggggctccgttctaagccagagc 26158922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 10083819 - 10083907
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||||||||| ||| | | | |||||||| || ||||||| |||||||||||||||||||| |||||  |||| |||||||    
T  10083819 aaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgtgggggccccgtttaaagccagagcaa 10083907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 454
Target Start/End: Original strand, 22243054 - 22243185
Alignment:
Q  324 aattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttct 423  Q
    |||||| ||| ||| || ||||||||| ||  ||| |||||| | ||||| |  ||||| |||||| ||| | ||||||  |||||||||||||||||||    
T  22243054 aattacattagagggcatgtgtttaataacaattaaaaaagatagaagggatattttttatccaaatcaattaggtgtatgatgctaatgcacaccttct 22243153  T
Q  424 aaaatcaaagtgggtgtg-cttagcattcccc 454  Q
    |||||  |||||||||||  ||||||||||||    
T  22243154 aaaattgaagtgggtgtgtattagcattcccc 22243185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 453
Target Start/End: Original strand, 46753872 - 46754007
Alignment:
Q  319 atgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacac 418  Q
    |||||||||||| | |||||||||  |||||  ||  ||| ||||||||| | ||||  |||||||| |||  |||| || |||| ||||||||||||||    
T  46753872 atgaaaattactatgaaggacaagcatttaagtacaattaaaaaagagaagaagggtattttttgtctaaattaaataggagtaggatgctaatgcacac 46753971  T
Q  419 cttctaaaatcaaagtgggtgtg-cttagcattccc 453  Q
     ||||||||| || |||||||||  |||||||||||    
T  46753972 tttctaaaattaaggtgggtgtgtattagcattccc 46754007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 18176886 - 18176975
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||| |||||||||| ||| | | | ||||||||||| ||||||| ||||| ||||||| |||||| |||||  |||| |||||||    
T  18176886 taaaactctgtatccgatccaagaatcgactaatccgatgggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagcaa 18176975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 49258261 - 49258350
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||| |||||||||| ||| | | | |||||||| || ||||||| ||||| |||||||||||||| |||||  |||| |||||||    
T  49258261 taaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgcccacttgtgggggccccgtttaaagccagagcaa 49258350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 10190742 - 10190830
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||||||||| ||| | | | |||||||| || ||||||| ||||||||||||| |||||| |||||  |||| |||||||    
T  10190742 aaaactcggtatccgatccaagaatcgactaatccgaggggaccaatcccaccgtccacttgcgggggccccgtttaaagccagagcaa 10190830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 441
Target Start/End: Complemental strand, 46753335 - 46753272
Alignment:
Q  378 tttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg 441  Q
    |||||||| |||  |||| ||||||| ||||||||||||||||| |||||| || |||||||||    
T  46753335 tttttgtctaaattaaataggtgtaggatgctaatgcacaccttttaaaattaaggtgggtgtg 46753272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 544
Target Start/End: Complemental strand, 48105073 - 48105006
Alignment:
Q  477 aaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggc 544  Q
    |||||| |||||||||| ||| | | | |||||||| || ||||||||||||| ||||||||||||||    
T  48105073 aaactcggtatccgatccaagaatcgactaatccgaagggaccaatctcaccgcccacttgtgggggc 48105006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 537
Target Start/End: Complemental strand, 4048148 - 4048086
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttg 537  Q
    |||||||| |||||||||| ||| | ||| |||||||| || ||||||| |||||||||||||    
T  4048148 taaaactcggtatccgatccaagaatcaactaatccgaggggaccaatcccaccgtccacttg 4048086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 33398467 - 33398556
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||| || |||||||||| ||| | | | |||| ||| |||||||||| ||||| ||||||| |||||| |||||  ||||||||||||    
T  33398467 taaaattcggtatccgatccaagaatcgactaattcgagggaaccaatcccaccgcccacttgcgggggccccgtttaaagctagagcaa 33398556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 32151621 - 32151533
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||| |||||||||| ||| | | | |||| ||| || ||||||||||||| ||||||| |||||| |||||  |||| |||||||    
T  32151621 aaaactcggtatccgatccaagaatcgactaattcgaggggaccaatctcaccgcccacttgcgggggccccgtttaaagccagagcaa 32151533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 575
Target Start/End: Complemental strand, 16899687 - 16899601
Alignment:
Q  489 cgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtatg 575  Q
    ||||| ||||||| | |||||||| || |||||||||||||||||||||  ||||| ||||||||| | |||||||||||| |||||    
T  16899687 cgatccaaggaccgactaatccgaggggaccaatctcaccgtccacttgcaggggccccgttctaaaccagagcaaagctttgtatg 16899601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 441
Target Start/End: Original strand, 23729886 - 23730003
Alignment:
Q  323 aaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttc 422  Q
    ||||||||| ||||||||  | |||||| ||  |||||||||| ||||||| | ||||||||| |||  | || | ||||| ||||||||||||||||||    
T  23729886 aaattacttaaaaggacatttatttaattacaattagaaaagaaaaaagggat-atttttgtcaaaagaagatagatgtaggatgctaatgcacaccttc 23729984  T
Q  423 taaaatcaaagtgggtgtg 441  Q
    |||||| || |||||||||    
T  23729985 taaaataaaggtgggtgtg 23730003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 575
Target Start/End: Original strand, 9926145 - 9926245
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtat 574  Q
    |||||||| |||||||||| ||||||| | |||||  | || | ||||| ||||| ||| ||| |||||||||||||||||| |||||||| ||| ||||    
T  9926145 taaaactcggtatccgatcgaaggaccgactaatctaaagggatcaatcccaccgcccagttgcgggggctccgttctaagccagagcaaaactttgtat 9926244  T
Q  575 g 575  Q
    |    
T  9926245 g 9926245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 544
Target Start/End: Original strand, 37351454 - 37351521
Alignment:
Q  477 aaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggc 544  Q
    |||||| |||||||||| ||||||| | |||||||| || ||||||| ||||| ||||||||||||||    
T  37351454 aaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgtgggggc 37351521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 564
Target Start/End: Original strand, 12876963 - 12877024
Alignment:
Q  503 attaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||||| || ||||||| ||||||||||||| |||||| |||||  ||||||||||||    
T  12876963 attaatccgaggggaccaatcccaccgtccacttgcgggggccccgtttaaagctagagcaa 12877024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 9500355 - 9500443
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||  ||||||||| ||| | | | |||||||| |  ||||||||||||| ||||||||||||||||||||  |||| |||||||    
T  9500355 aaaactcgatatccgatccaagaatcgactaatccgaagagaccaatctcaccgcccacttgtgggggctccgtttaaagccagagcaa 9500443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 568
Target Start/End: Complemental strand, 1486617 - 1486523
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccactt--gtgggggctccgttctaagctagagcaaagct 568  Q
    ||||||| |||||||||| ||||||| | ||||| || || ||| ||| ||||||||||||  | |||||| ||||||||||  |||||||||||    
T  1486617 aaaactcggtatccgatccaaggaccgactaatcggaggggaccgatcccaccgtccacttgcgggggggccccgttctaagtcagagcaaagct 1486523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 454
Target Start/End: Complemental strand, 23729561 - 23729463
Alignment:
Q  356 ttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg-cttagcattcccc 454  Q
    |||||||||| |||| || | ||||||||| |||  | || ||||||| |||||||||||||||||||||||  || |||||||||  ||||||||||||    
T  23729561 ttagaaaagaaaaaacggat-atttttgtcaaaagaagataggtgtaggatgctaatgcacaccttctaaaacaaaggtgggtgtgtattagcattcccc 23729463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 561
Target Start/End: Original strand, 8779743 - 8779821
Alignment:
Q  483 agtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagag 561  Q
    ||||||||||||||| | | | |||||||| || ||||||| ||||| | |||||||||||| |||||  |||||||||    
T  8779743 agtatccgatctaagaatcgactaatccgaggggaccaatcccaccgcctacttgtgggggccccgtttaaagctagag 8779821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 568
Target Start/End: Complemental strand, 37047147 - 37047097
Alignment:
Q  518 ccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagct 568  Q
    |||||| |||||||||||||||||||| || ||  ||||||||||||||||    
T  37047147 ccaatcccaccgtccacttgtgggggccccatttaaagctagagcaaagct 37047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 33082600 - 33082527
Alignment:
Q  368 aaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg 441  Q
    |||||||| | ||||||||||  ||||| |||| |  |||||||||||||||||||||||| || |||| ||||    
T  33082600 aaaggggtaaattttgtccaatacaaataggtgcatgatgctaatgcacaccttctaaaattaaggtggatgtg 33082527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 1379086 - 1379026
Alignment:
Q  484 gtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggc 544  Q
    |||||||||||||| | | | ||||| || || ||||||||||||||||||||| ||||||    
T  1379086 gtatccgatctaagaatcgactaatctgaggggaccaatctcaccgtccacttgcgggggc 1379026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 441
Target Start/End: Original strand, 15285576 - 15285711
Alignment:
Q  305 ggtgtgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtaga 404  Q
    |||||||||||||||||||| |||| | | ||||||  |||||||| ||  ||| |||||  || | ||||  |||||||||||| ||| | |||||||     
T  15285576 ggtgtgggccaggcatgaaa-ttacatcagaggacatatgtttaataacaattaaaaaagttaagaagggtattttttgtccaaatcaattaggtgtagg 15285674  T
Q  405 atgctaatgcacaccttctaaaatcaaagtgggtgtg 441  Q
    |||||||||||||| |||||||||  |||||||||||    
T  15285675 atgctaatgcacacattctaaaattgaagtgggtgtg 15285711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 557
Target Start/End: Complemental strand, 14487022 - 14486941
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagct 557  Q
    ||||||| |||||||||| ||||||| | |||||||| || ||||||| ||||| |||||||  ||||| ||||||||||||    
T  14487022 aaaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgcccacttgcaggggccccgttctaagct 14486941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 453
Target Start/End: Original strand, 22482823 - 22482943
Alignment:
Q  334 aaggacaagtgtttaatgacttttagaaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaag 433  Q
    |||||||||  ||||| |||  ||| ||||||||| | ||||  |||||||| |||  |||| || |||| |||||||||||||||||||||||| || |    
T  22482823 aaggacaagcatttaaggacaattaaaaaagagaagaagggtattttttgtctaaattaaataggagtaggatgctaatgcacaccttctaaaattaatg 22482922  T
Q  434 tgggtgtg-cttagcattccc 453  Q
    ||||||||  |||||||||||    
T  22482923 tgggtgtgtattagcattccc 22482943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 425
Target Start/End: Complemental strand, 15285187 - 15285066
Alignment:
Q  305 ggtgtgggccaggcatgaaaattactttaaaggacaagtgtttaatgacttttagaaaagagaaaaggggt-catttttgtccaaaccaaatgggtgtag 403  Q
    ||||||||||||||||||||||||| ||| ||| || ||||||||| ||  ||| |||||| | |||||||   |||||||||||| ||  | | ||||     
T  15285187 ggtgtgggccaggcatgaaaattacattagagggcatgtgtttaataacaattaaaaaagatagaaggggtatttttttgtccaaatcagttagatgtat 15285088  T
Q  404 aatgctaatgcacaccttctaa 425  Q
     |||| ||||||||||||||||    
T  15285087 gatgccaatgcacaccttctaa 15285066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 568
Target Start/End: Complemental strand, 19174960 - 19174868
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagct 568  Q
    ||||| || |||||||||| ||||||| |||||||||| || | ||||| ||||| ||| ||  |||| ||||||||||||| |||||||||||    
T  19174960 taaaattcggtatccgatccaaggaccgattaatccgaggggatcaatcccaccgcccatttacgggg-ctccgttctaagccagagcaaagct 19174868  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 441
Target Start/End: Complemental strand, 22482289 - 22482209
Alignment:
Q  360 aaaagagaaaaggggtcatttttgtccaaaccaaatgggtgtagaatgctaatgcacaccttctaaaatcaaagtgggtgtg 441  Q
    |||||||| || |||| ||||||||| |||  |||| ||||||| |||||||||||||||||||||||| ||  ||||||||    
T  22482289 aaaagagagaaagggt-atttttgtctaaattaaataggtgtaggatgctaatgcacaccttctaaaattaagatgggtgtg 22482209  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 568
Target Start/End: Original strand, 8192352 - 8192443
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagct 568  Q
    ||||||| |||||||||| ||||||| | |||||||| ||  |||||| ||||| ||||||| | |||  ||||||||||| |||||||||||    
T  8192352 aaaactcggtatccgatccaaggaccgactaatccgaggggcccaatcccaccgcccacttgcgagggg-ccgttctaagccagagcaaagct 8192443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 23857859 - 23857905
Alignment:
Q  405 atgctaatgcacaccttctaaaatcaaagtgggtgtgc-ttagcatt 450  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||    
T  23857859 atgctaatgcacaccttctaaaattcaagtgggtgtgcattagcatt 23857905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 28194138 - 28194219
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagct 557  Q
    ||||||| |||||||||| ||||||| | ||||| || |  ||||||| ||||| | ||||| |||||| ||||||||||||    
T  28194138 aaaactcggtatccgatccaaggaccgactaatctgacgagaccaatcccaccgcctacttgcgggggccccgttctaagct 28194219  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 544
Target Start/End: Complemental strand, 41330040 - 41329971
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggc 544  Q
    |||||||| ||||||| || ||| ||| | ||||| || || ||||||||||||| ||||||||||||||    
T  41330040 taaaactcggtatccggtccaagaaccgactaatctgaggggaccaatctcaccgcccacttgtgggggc 41329971  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 39459493 - 39459404
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaa 565  Q
    |||||||||||||| || | || |||||| |||||||| || |  |||||||||||||||||| |||||||||||| ||||| ||||||||    
T  39459493 taaaactcagtatctgacc-aatgaccaactaatccgaggggattaatctcaccgtccacttgagggggctccgttttaagccagagcaaa 39459404  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 550
Target Start/End: Complemental strand, 4603974 - 4603900
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgtt 550  Q
    ||||||| |||||||||| ||||||| | |||||||| || ||||||| |||||||||||||  ||||| |||||    
T  4603974 aaaactcggtatccgatccaaggaccgactaatccgaggggaccaatcccaccgtccacttgcaggggccccgtt 4603900  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 10837494 - 10837440
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccg 529  Q
    |||||||| |||||||||||||||||||| ||||| || || |||||||||||||    
T  10837494 taaaactcggtatccgatctaaggaccaactaatctgaggggaccaatctcaccg 10837440  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 23290749 - 23290705
Alignment:
Q  520 aatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||    
T  23290749 aatctcaccgcccacttgcgggggctccgttctaagccagagcaa 23290705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 581
Target Start/End: Complemental strand, 36895623 - 36895517
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagcttggtat 574  Q
    |||||||| |||||||||| ||| ||| | |||| ||| |  | ||||| | ||| ||||||| || |||| |||||||||| |||||||||||| ||||    
T  36895623 taaaactcggtatccgatccaagaaccgactaattcgaggagaacaatccccccgcccacttgcggcggctacgttctaagccagagcaaagctttgtat 36895524  T
Q  575 gaacttg 581  Q
    | |||||    
T  36895523 ggacttg 36895517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 542
Target Start/End: Original strand, 23016712 - 23016769
Alignment:
Q  485 tatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggg 542  Q
    |||||| |||||||||| | |||||||| ||  |||||||||||||||||||| ||||    
T  23016712 tatccggtctaaggacctactaatccgaggggtccaatctcaccgtccacttgcgggg 23016769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 568
Target Start/End: Original strand, 24158165 - 24158258
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaaagct 568  Q
    ||||| || |||||||||  ||||||| | ||||| || || ||||||||||||| |||||||  | ||| ||||||||||| |||| ||||||    
T  24158165 taaaattcggtatccgattcaaggaccgactaatctgaggggaccaatctcaccgcccacttgcagaggccccgttctaagccagagtaaagct 24158258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 564
Target Start/End: Complemental strand, 34310340 - 34310251
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||| |||||||||| ||| | | |||||| ||| || ||||||| |||||||||||| ||||||  |||||  |||| |||||||    
T  34310340 taaaactcggtatccgatccaagaatcgattaattcgaggggaccaatcccaccgtccacttatgggggtcccgtttaaagccagagcaa 34310251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 543
Target Start/End: Original strand, 9659310 - 9659378
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtggggg 543  Q
    |||||||| |||||| ||| ||| | ||| |||||||| || ||||||| ||||||||||||| |||||    
T  9659310 taaaactcggtatcccatccaagaatcaactaatccgaagggaccaatcccaccgtccacttgcggggg 9659378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 543
Target Start/End: Original strand, 9978509 - 9978576
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtggggg 543  Q
    ||||||| |||||||||||||| | ||| ||||||||||| ||||||| ||||| ||||||| |||||    
T  9978509 aaaactcggtatccgatctaagaatcaactaatccgatgggaccaatcccaccgcccacttgcggggg 9978576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 531
Target Start/End: Original strand, 46759102 - 46759158
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtc 531  Q
    |||| ||| ||||||||||||| || | |||||||||| ||||||||||||||||||    
T  46759102 taaacctcggtatccgatctaaagatcgattaatccgagggaaccaatctcaccgtc 46759158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 54127342 - 54127430
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    ||||||||||||||| || ||| ||| | |||||||| || ||||||| ||||| ||||||| |||||| |||||  |||| |||||||    
T  54127342 aaaactcagtatccggtccaagaaccgactaatccgaggggaccaatcccaccgcccacttgcgggggccccgtttaaagccagagcaa 54127430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 550
Target Start/End: Complemental strand, 4065028 - 4064983
Alignment:
Q  505 taatccgatggaaccaatctcaccgtccacttgtgggggctccgtt 550  Q
    |||||||| || ||||||| ||||| ||||||||||||||||||||    
T  4065028 taatccgaggggaccaatcccaccgcccacttgtgggggctccgtt 4064983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 549
Target Start/End: Original strand, 27528795 - 27528868
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgt 549  Q
    ||||||| |||||||||| ||| | | | |||||||| || ||||||||||||| ||||||| |||||| ||||    
T  27528795 aaaactcggtatccgatccaagaatcgactaatccgaggggaccaatctcaccgcccacttgcgggggccccgt 27528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 544
Target Start/End: Complemental strand, 27574515 - 27574447
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggc 544  Q
    |||||||||||||||||| ||| |   |||||||||| || ||||| ||||||| ||||||| ||||||    
T  27574515 aaaactcagtatccgatccaagaattgattaatccgaggggaccaaactcaccgcccacttgcgggggc 27574447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 556
Target Start/End: Complemental strand, 8479485 - 8479414
Alignment:
Q  485 tatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagc 556  Q
    ||||||||||||||| | | ||||| || || |||||||||| || ||||||||| |||||||||| |||||    
T  8479485 tatccgatctaaggaacgactaatctgaggggaccaatctcatcgcccacttgtgagggctccgttttaagc 8479414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 550
Target Start/End: Original strand, 5360071 - 5360145
Alignment:
Q  476 aaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgtt 550  Q
    ||||||| |||||||||||||| | | | |||| ||| || ||||||| ||||| ||||||||||||| ||||||    
T  5360071 aaaactcggtatccgatctaagaatcgactaattcgaggggaccaatcccaccgcccacttgtgggggttccgtt 5360145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 9690637 - 9690726
Alignment:
Q  475 taaaactcagtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagcaa 564  Q
    |||||||| |||||||||| ||| | | | ||||||||  | ||||||| ||||||||||||||| |||| |||||  |||| |||||||    
T  9690637 taaaactcggtatccgatccaagaatcgactaatccgagaggaccaatcccaccgtccacttgtgagggccccgtttaaagccagagcaa 9690726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 563
Target Start/End: Original strand, 28741848 - 28741928
Alignment:
Q  483 agtatccgatctaaggaccaattaatccgatggaaccaatctcaccgtccacttgtgggggctccgttctaagctagagca 563  Q
    ||||||||||| ||||||| | |||| |||  | ||||||| |||| |||| ||||||||| |||||| ||||| ||||||    
T  28741848 agtatccgatccaaggaccgactaattcgagaggaccaatcacaccatccatttgtgggggttccgttttaagccagagca 28741928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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