View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196-Insertion-6 (Length: 579)
Name: NF5196-Insertion-6
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 7 - 572
Target Start/End: Original strand, 2949449 - 2950014
Alignment:
| Q |
7 |
ataaaacactcaatatgttttgttaactgcatacatatatcatatgacatgatgtgttcaattgctagccttgcatgatatgtctcttaattacttggga |
106 |
Q |
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| T |
2949449 |
ataaaacactcaatatgttttgttaactgcatacatatatcatatgacatgatgtgttcaattgctagccttgcatgatatgtctcttaattacttggga |
2949548 |
T |
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| Q |
107 |
tgcttcctcttctgcacgtcttctttcttcaaggagacattattannnnnnncattatccttattatggtaaagagtccctataatacaaaagtaagcag |
206 |
Q |
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| T |
2949549 |
tgcttcctcttctgcacgtcttctttcttcaaggagacattattatttttttcattatccttattatggtaaagagtccctataatacaaaagtaagcag |
2949648 |
T |
|
| Q |
207 |
gtgtatatgccagttttttaggagatttttcctagatttgatgagtgagttatgtatttgtctgaccaaaataggcatctcaagtaaatctactcatgga |
306 |
Q |
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| T |
2949649 |
gtgtatatgccagtttttaaggagatttttcctagatttgatgagtgagttatgtatttgtctgaccaaaataggcatctcaagtaaatctactcatgga |
2949748 |
T |
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| Q |
307 |
tatcattgaatgcttcaactcctaaacttgtttgtaatgctttgttcaacttgaaatctttccaatatctatactaaattttcaacaggaggcacataca |
406 |
Q |
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| T |
2949749 |
tatcattgaatgcttcaactcctaaacttgtttgtaatgctttgttcgacttgaaatctttccaatatctatactaaattttcaacaggaggcacataca |
2949848 |
T |
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| Q |
407 |
tacttttcctaatccttcatttttatgtagagaaaaatcttttgatagatcttttttctcagcaaccaaaatggatatataaattaatctcatcctaact |
506 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949849 |
tacttttcctaatccttcatttttatgtagaggaaaatcttttgatagatcttttttctcagcaaccaaaatggatatataaattaatctcatcctaact |
2949948 |
T |
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| Q |
507 |
aaaaaacttcatgtcttaattctcaagatatatcatacgtcattggtgattcattttgttcatctt |
572 |
Q |
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| T |
2949949 |
aaaaaacttcatgtcttaattctcaagatatatcatacgtcattggtgattcattttgttcatctt |
2950014 |
T |
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