View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196_high_11 (Length: 241)
Name: NF5196_high_11
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 45533957 - 45534170
Alignment:
| Q |
9 |
tcgaggaaccagaaaatgaggagaaatgtaagagagaaacagaacacattaaaaatgttgagtgtgacccgtcaatttacatatctagcattcataaagg |
108 |
Q |
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| T |
45533957 |
tcgaggaaccagaaaatgaggagaaatgtaagagacaaacagaacacattaaaaatgttgagtgtgacccgtcaatttacatatctagcattcataaagg |
45534056 |
T |
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| Q |
109 |
tgcaaataaaatgtcaataaaagttaattaagttaatgatggatgatactcgtattggttggttattacctaattatgaagcacaaacactgctaggata |
208 |
Q |
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| T |
45534057 |
tgcaaataaaatgtcaataaaagttaattaagttaatgatggatgatactcatattggttggttattacctaattatgaagcacaaacactcctcggata |
45534156 |
T |
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| Q |
209 |
aggtgtgtccctat |
222 |
Q |
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||| |||||||||| |
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| T |
45534157 |
aggcgtgtccctat |
45534170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 35202747 - 35202786
Alignment:
| Q |
12 |
aggaaccagaaaatgaggagaaatgtaagagagaaacaga |
51 |
Q |
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| T |
35202747 |
aggaaccagaaaatgaggagaattgtaagagagaaacaga |
35202786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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