View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5196_high_12 (Length: 237)
Name: NF5196_high_12
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35371402 - 35371636
Alignment:
| Q |
1 |
acaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35371402 |
acaaactaatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttaa |
35371501 |
T |
|
| Q |
101 |
cacattagagttttaggcagcgggagcatagtcataaccaccgtcg------------tcgtcatcgccttccttgcatgagtctcgatctccattgcgg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35371502 |
cacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcgtcgtcatcgtcgtcgccttccttgcatgagtctcgatctccattgcgg |
35371601 |
T |
|
| Q |
189 |
taatcttcttcaatgcaagatacacttgtataatc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35371602 |
taatcttcttcaatgcaagatacacttgtataatc |
35371636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 35355526 - 35355728
Alignment:
| Q |
21 |
taatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttatcacattagagttttaggcag |
120 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||| |
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|
| T |
35355526 |
taatttcgaactatattaaacgactattaactatatcttcaatatgctataatactaactagt-gacttatgtaagttaacacattagagttttaggcag |
35355624 |
T |
|
| Q |
121 |
cgggagcatagtcataaccaccg---tcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgt |
217 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |||||||||||| || | |||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
35355625 |
caggagcatagtcataaccaccgtcatcgtcatcatcgccttccatgtaagagtctcgatctccattgcgataatcttcttcaatgcaagatacatatgt |
35355724 |
T |
|
| Q |
218 |
ataa |
221 |
Q |
| |
|
|||| |
|
|
| T |
35355725 |
ataa |
35355728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 35343770 - 35343555
Alignment:
| Q |
12 |
gttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaag---ctaactagaagactaatgtaagttatcacattag |
108 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
35343770 |
gttaagttctaatttcgaactttattaaacgactactaactatatcttcaatatgctgtaaatatcctaactagaagactaatgtaagttaacacattag |
35343671 |
T |
|
| Q |
109 |
agttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc---gccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgca |
205 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| || |||||||| |||||| |||||||||||||||||||||||| | |||| |||||||||||| |
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|
| T |
35343670 |
tgttttaggcggctggagcatagtcgtaaccaccatcatcgtcatcatcgccttctttgcatgagtctcgatctccattgtgataattttcttcaatgca |
35343571 |
T |
|
| Q |
206 |
agatacacttgtataa |
221 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
35343570 |
agatacacatgtataa |
35343555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 35348418 - 35348246
Alignment:
| Q |
52 |
tatatctttaatatgctataaagctaactagaagactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccac---cgtcgtc |
148 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| | ||||| |
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|
| T |
35348418 |
tatatcttcaatatgctataatcctaactagaagactaatgtaagttaacacattagagttttaggcagtgggagcatagtcgtaaccaccatcatcgtc |
35348319 |
T |
|
| Q |
149 |
gtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatgcaagatacacttgtataa |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
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|
| T |
35348318 |
atcatcaccttccttgcatgagtctcgatctccattgcgattatcttctttaatgcaagatacacttgtataa |
35348246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 35345904 - 35346121
Alignment:
| Q |
7 |
taatagttaagtactaatttcgaactatattaatcgactaccaactatatctttaatatgctataaagctaactagaagactaatgtaagttatcacatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||| ||| | | |||||| | ||| |||||||||| |||||| |
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|
| T |
35345904 |
taatagttaagtactaatttttaactatattaaacgactactaactatatcttcaataggctttgatattaactactatacttatgtaagttaacacatt |
35346003 |
T |
|
| Q |
107 |
agagttttaggcagcgggagcatagtcataaccac---cgtcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttcttcaatg |
203 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||| | || ||| |||| |||||||| ||||||||| |||| |
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|
| T |
35346004 |
agagttttacgcagcgggagcatagtcataaccaccatcatcgtcatcatcgccttccttgtaagaatcttgatccccattgcgataatcttctacaata |
35346103 |
T |
|
| Q |
204 |
caagatacacttgtataa |
221 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
35346104 |
caagatacagatgtataa |
35346121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 35374296 - 35374420
Alignment:
| Q |
102 |
acattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg---ccttccttgcatgagtctcgatctccattgcggtaatcttctt |
198 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| | | || ||||| ||||| || | |||||||||| |
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|
| T |
35374296 |
acattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcatcatcaccttcctggtaagaatctcggtctccgttatgataatcttctt |
35374395 |
T |
|
| Q |
199 |
caatgcaagatacacttgtataatc |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35374396 |
caatgcaagatacacttgtataatc |
35374420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 35364257 - 35364372
Alignment:
| Q |
101 |
cacattagagttttaggcagcgggagcatagtcataaccaccg---tcgtcgtcatcgccttccttgcatgagtctcgatctccattgcggtaatcttct |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || || | | |||||| || ||| ||||||||| |
|
|
| T |
35364257 |
cacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttccctgtataaatttcgatccccgttggtataatcttct |
35364356 |
T |
|
| Q |
198 |
tcaatgcaagatacac |
213 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35364357 |
tcaatgcaagatacac |
35364372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 35368116 - 35368195
Alignment:
| Q |
85 |
gactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccg---tcgtcgtcatcgccttcc |
161 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35368116 |
gactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccgtcatcgtcgtcatcgccttcc |
35368195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 35335492 - 35335561
Alignment:
| Q |
85 |
gactaatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
154 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35335492 |
gactaatgtaagttaacacattactactttatgcagcgggagcatagtcataaccaccgtcgtcatcatc |
35335561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 35351004 - 35351069
Alignment:
| Q |
89 |
aatgtaagttatcacattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
154 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
35351004 |
aatgtaagttagcacattagagtcttatgcagcgggagcgtagtcataaccaccatcatcgtcatc |
35351069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 35340577 - 35340647
Alignment:
| Q |
85 |
gactaatgtaagttatcacattagagtttt-aggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
154 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35340577 |
gactaatataagttcacacattagagtttttatgcagctggagcatagtcataaccaccatcgtcgtcatc |
35340647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 9063754 - 9063712
Alignment:
| Q |
112 |
tttaggcagcgggagcatagtcataaccaccgtcgtcgtcatc |
154 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
9063754 |
tttaagcagcgggagcatagtcataaccaccatcatcgtcatc |
9063712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 9077454 - 9077343
Alignment:
| Q |
103 |
cattagagttttaggcagcgggagcatagtcataaccaccgtcgtcgtcatcg---ccttccttgcatgagtctcgatctccattgcggtaatcttcttc |
199 |
Q |
| |
|
||||||||||| || | ||||||||||| |||||| |||| ||||||||||| |||||| || |||| ||| ||||||| || |||||||||| || |
|
|
| T |
9077454 |
cattagagtttaag-cggcgggagcataatcataatcaccatcgtcgtcatcatcaccttccctgtatgaatctacatctccagtgtggtaatcttcatc |
9077356 |
T |
|
| Q |
200 |
aatgcaagataca |
212 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9077355 |
attgcaagataca |
9077343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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