View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5196_high_4 (Length: 319)

Name: NF5196_high_4
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5196_high_4
NF5196_high_4
[»] chr7 (8 HSPs)
chr7 (8-301)||(7199742-7200035)
chr7 (153-214)||(3756376-3756438)
chr7 (155-205)||(10084622-10084672)
chr7 (160-205)||(9902174-9902220)
chr7 (153-214)||(33818959-33819021)
chr7 (153-214)||(41909365-41909426)
chr7 (177-205)||(31756888-31756916)
chr7 (150-214)||(46080898-46080962)
[»] chr8 (4 HSPs)
chr8 (117-214)||(22842149-22842249)
chr8 (155-205)||(38006564-38006615)
chr8 (153-215)||(33102110-33102173)
chr8 (153-214)||(12750156-12750218)
[»] chr5 (8 HSPs)
chr5 (153-214)||(37442613-37442674)
chr5 (154-214)||(9828181-9828241)
chr5 (153-214)||(32827080-32827141)
chr5 (77-214)||(32303609-32303748)
chr5 (150-210)||(9979677-9979738)
chr5 (154-205)||(34594666-34594717)
chr5 (164-214)||(15398371-15398421)
chr5 (153-205)||(8055165-8055218)
[»] chr4 (8 HSPs)
chr4 (77-193)||(30097447-30097564)
chr4 (153-214)||(959083-959144)
chr4 (153-214)||(52450178-52450240)
chr4 (151-205)||(1845833-1845888)
chr4 (155-205)||(24393619-24393670)
chr4 (171-214)||(37688820-37688863)
chr4 (153-214)||(8434238-8434299)
chr4 (153-205)||(33648209-33648262)
[»] chr3 (3 HSPs)
chr3 (96-214)||(36703049-36703169)
chr3 (154-205)||(20991562-20991614)
chr3 (153-204)||(35310435-35310487)
[»] chr2 (9 HSPs)
chr2 (153-214)||(39556023-39556084)
chr2 (157-214)||(43294660-43294717)
chr2 (93-214)||(13387318-13387441)
chr2 (153-214)||(17793874-17793935)
chr2 (153-214)||(33833456-33833517)
chr2 (153-205)||(8513961-8514013)
chr2 (153-205)||(6620013-6620066)
chr2 (177-205)||(8514054-8514082)
chr2 (93-141)||(39555931-39555979)
[»] chr6 (7 HSPs)
chr6 (147-214)||(23252889-23252957)
chr6 (153-205)||(2725849-2725902)
chr6 (153-210)||(30841112-30841169)
chr6 (153-214)||(2146731-2146792)
chr6 (160-214)||(3607063-3607117)
chr6 (153-214)||(17497609-17497670)
chr6 (153-205)||(20890415-20890467)
[»] scaffold0254 (1 HSPs)
scaffold0254 (153-214)||(23192-23253)
[»] chr1 (3 HSPs)
chr1 (154-214)||(14210605-14210664)
chr1 (153-205)||(21322574-21322627)
chr1 (157-201)||(29855941-29855986)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 7199742 - 7200035
Alignment:
Q  8 tgagatgaaacatatgttcgttaagtatcaattttactcttacatcatattattagaagtccgtcacaggaattgcttttttcctatctgtttttattca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||||||||| |||||||| ||||| ||||    
T  7199742 tgagatgaaacatatgttcgttaagtatcaattttactcttaggtcatattattagaagtccgtcacggaaattgcttttctcctatctatttttgttca 7199841  T
Q  108 ttc-cagtcctacgtgagttaacgcacgctaaaaaatagttatgtaagttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaa 206  Q
    ||  ||||||||| ||||||||| |||||||||||| ||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  7199842 ttttcagtcctacatgagttaactcacgctaaaaaacagttacgtaagttaa-tcacgctcgattatttgacggaaataagcaaaaacagatgggagaaa 7199940  T
Q  207 aacaattagttaaaagtatatcccttcttttgtgggatatatgccattttgaggctggagcccatattctgttacaccatgcctactacttttag 301  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7199941 aacaattagctaaaagtatatcccttcttttgtgggatatatgccattttgaggctggagcccatattctgttacaccatgcctactacttttag 7200035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 3756438 - 3756376
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | ||||||    
T  3756438 agttaactcacactcgactattttgacgggaatgagcaaaaacaaatgggagaagagcaatta 3756376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 10084672 - 10084622
Alignment:
Q  155 ttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||||| | ||||||||||| |||||||||||||||||| |||||    
T  10084672 ttaactcacgcttggctatttgacgggaatgagcaaaaacagatgagagaa 10084622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 9902174 - 9902220
Alignment:
Q  160 tcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  9902174 tcacgctcgattattttgacgggaatgagcaaaaacagatgggagaa 9902220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 33818959 - 33819021
Alignment:
Q  153 agttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||||| ||| ||| ||||||||  |||||||||||||||||| |||||| ||||||    
T  33818959 agttaactcacgttcgcctactttgacggggatgagcaaaaacagatggaagaaaagcaatta 33819021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 41909365 - 41909426
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||| ||||| || |||||||||| |||||| ||||||||||| ||||| | ||||||    
T  41909365 agttaacttacgcttgattatttgacgggaatgagaaaaaacagatgagagaagagcaatta 41909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 31756888 - 31756916
Alignment:
Q  177 acggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||||||||||||||||||||||    
T  31756888 acggaaatgagcaaaaacagatgggagaa 31756916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 46080898 - 46080962
Alignment:
Q  150 gtaagttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||||| |||||  |||| |||  |||||||||||||||||||| ||||| | ||||||    
T  46080898 gtaagttaactcgcgctccgctatctgaaagaaatgagcaaaaacagatgagagaagagcaatta 46080962  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 22842249 - 22842149
Alignment:
Q  117 tacgtgagttaacgcacgctaaaaaatag--ttatgtaagttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatt 213  Q
    |||||||||||||||| || ||||||||   ||| || ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| |||||||    
T  22842249 tacgtgagttaacgcatgcaaaaaaatacatttacgtgagttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaagaacaatt 22842150  T
Q  214 a 214  Q
    |    
T  22842149 a 22842149  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 38006564 - 38006615
Alignment:
Q  155 ttaactcacgctcgactatttga-cggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  38006564 ttaactcacgctcgactattttaacgggaatgagcaaaaacagatgggagaa 38006615  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 33102110 - 33102173
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaattag 215  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||  ||||| | |||||||    
T  33102110 agttaactcacgctcggctattttgacgggaatgagcaaaaacagataagagaagagcaattag 33102173  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 12750218 - 12750156
Alignment:
Q  153 agttaactcacgctcgactatttg-acggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||||||||| ||||||| ||||  ||||| ||||||||||||||||| | ||||||    
T  12750218 agttaactcacgctcggctatttggacggggatgaggaaaaacagatgggagaagagcaatta 12750156  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 37442613 - 37442674
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| |||| | ||||||    
T  37442613 agttaactcacgctcggctatttgacgggaatgagcaaaaacagatggaagaagagcaatta 37442674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 9828241 - 9828181
Alignment:
Q  154 gttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||| | ||||||    
T  9828241 gttaactcacgctctactatttgacgggaatgagcaaaaccagatgggagaagagcaatta 9828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 32827080 - 32827141
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||| | |||||||||||||||||||||||||||| |||| |||||| | ||||||    
T  32827080 agttaactcatgttcgactatttgacggaaatgagcaaaaatagataggagaatagcaatta 32827141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 32303748 - 32303609
Alignment:
Q  77 gaattgcttttttcctatctgtttttattcattccagtcctacgtgagttaacgcacgctaaaaa-atagttatgtaagttaactcacgctcgacta-tt 174  Q
    |||||||| || ||| ||| ||||||  ||||| | |||||| |||||||||| |||||| |||| | |  |  || |||||||||||||||||||| ||    
T  32303748 gaattgctcttctcccatccgtttttgctcatttccgtcctatgtgagttaactcacgctgaaaatacacatgcgtgagttaactcacgctcgactattt 32303649  T
Q  175 tgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||| |||||||||||| ||||||| |||| | ||||||    
T  32303648 tgacgaaaatgagcaaaatcagatggaagaagagcaatta 32303609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 9979677 - 9979738
Alignment:
Q  150 gtaagttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaaaaaca 210  Q
    ||||||||||||||||||||||| ||||||   ||||| |||||||||||||||||| ||||    
T  9979677 gtaagttaactcacgctcgactattttgacatgaatgaacaaaaacagatgggagaagaaca 9979738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 34594717 - 34594666
Alignment:
Q  154 gttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||||||| |||||| |||| |||||| ||||| |||||||||||    
T  34594717 gttaactcacgctcggctatttaacgggaatgagaaaaaaaagatgggagaa 34594666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 15398371 - 15398421
Alignment:
Q  164 gctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||| |||||||||| |||||||||||| ||||||||||| | ||||||    
T  15398371 gctcgattatttgacggtaatgagcaaaaatagatgggagaagagcaatta 15398421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 8055218 - 8055165
Alignment:
Q  153 agttaactcacgctcgacta-tttgacggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||||||||||||| ||| |||| || |||||||||| ||||||||||    
T  8055218 agttaactcacgctcgactattttaacgggaacgagcaaaaactgatgggagaa 8055165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 30097564 - 30097447
Alignment:
Q  77 gaattgcttttttcctatctgtttttattcattccagtcctacgtgagttaacgcacgctaaaaaatagt-tatgtaagttaactcacgctcgactattt 175  Q
    |||||||| || ||| ||||| ||||| ||||| |  | |||||||||||||| |||| |||||||||   |  || |||||||||||||||||||||||    
T  30097564 gaattgctcttctcccatctgcttttactcatttccattctacgtgagttaacccacgttaaaaaatacactgcgtgagttaactcacgctcgactattt 30097465  T
Q  176 gacggaaatgagcaaaaa 193  Q
    || |||||||||||||||    
T  30097464 gatggaaatgagcaaaaa 30097447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 959144 - 959083
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||    
T  959144 agttaactgacgctcgattatttaacggaaatgagcaaaaatagatgggagaagagcaatta 959083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 52450178 - 52450240
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||||||||| |||||| ||||| |||||| ||||||||||||||| ||| ||||||    
T  52450178 agttaactcacgctcggctattttgacgggaatgagtaaaaacagatgggaggaaagcaatta 52450240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 1845888 - 1845833
Alignment:
Q  151 taagttaactcacgctcgactat-ttgacggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||||||||| |||||| ||||||| |||||| |||||||||| ||||||    
T  1845888 taagttaactcacgcttgactatattgacgggaatgagaaaaaacagataggagaa 1845833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 24393670 - 24393619
Alignment:
Q  155 ttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||||| ||||||| || || ||||||||||||||||||||||||    
T  24393670 ttaactcacgctcaactattttgatgggaatgagcaaaaacagatgggagaa 24393619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 37688863 - 37688820
Alignment:
Q  171 tatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||    
T  37688863 tatttaacggaaatgaacaaaaacagatgggagaagaacaatta 37688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 8434238 - 8434299
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||||| ||||||||  |||||||| |||||||||||||| ||||| ||||| | ||||||    
T  8434238 agttaacgcacgctcggttatttgacagaaatgagcaaaaaaagatgagagaagagcaatta 8434299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 33648262 - 33648209
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||| ||||||||||| ||||| |||||||||||| | |||||||||    
T  33648262 agttaactcacactcgactattttgacgggaatgagcaaaaatatatgggagaa 33648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 36703049 - 36703169
Alignment:
Q  96 tgtttttattcattccagtcctacgtgagttaacgcacgctaaaaaatagt--tatgtaagttaactcacgctcgactatttgacggaaatgagcaaaaa 193  Q
    |||||||  ||||||| ||||||||||||||||  |||||| || ||||    || || | |||||||||||||||| |||| |||||||||| ||||||    
T  36703049 tgtttttgctcattcccgtcctacgtgagttaattcacgctgaagaatacacctacgtgaattaactcacgctcgacaatttaacggaaatgaacaaaaa 36703148  T
Q  194 cagatgggagaaaaacaatta 214  Q
    |||||||||||| ||| ||||    
T  36703149 cagatgggagaagaacgatta 36703169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 20991614 - 20991562
Alignment:
Q  154 gttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||||||| |||||| ||||| |||||||||||  |||||||||||    
T  20991614 gttaactcacgctcggctattttgacgggaatgagcaaaattagatgggagaa 20991562  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 35310435 - 35310487
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggaga 204  Q
    |||||||||||||||| |||||| |||||  ||||||||||| ||||||||||    
T  35310435 agttaactcacgctcggctattttgacggggatgagcaaaaatagatgggaga 35310487  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 39556023 - 39556084
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  39556023 agttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaatta 39556084  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 43294660 - 43294717
Alignment:
Q  157 aactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  43294660 aactcacgctcaactatttgacggaaatgagtaaaaacagatgagagaagaacaatta 43294717  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 13387441 - 13387318
Alignment:
Q  93 atctgtttttattcattccagtcctacgtgagttaacgcacgctaaaaa-atagttatgtaagttaactcacgctcgactattt-gacggaaatgagcaa 190  Q
    |||| ||||| |||||||  ||||||||||||||||| || | | |||| | |  || || |||||||||||||| |||||||| ||||| |||||  ||    
T  13387441 atctatttttgttcattctcgtcctacgtgagttaactcatgatgaaaatacacatacgtgagttaactcacgcttgactattttgacgggaatgaagaa 13387342  T
Q  191 aaacagatgggagaaaaacaatta 214  Q
    ||||||||||||||||||||||||    
T  13387341 aaacagatgggagaaaaacaatta 13387318  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 17793935 - 17793874
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||| |||||||||||||| ||||||||||  ||||||| |||| |||| ||||||||    
T  17793935 agttaacttacgctcgactatttaacggaaatgaataaaaacatatggaagaagaacaatta 17793874  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 33833456 - 33833517
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||||| |||||||| ||||||||| | |||||| ||||||||||||||||| | ||||||    
T  33833456 agttaacccacgctcggctatttgacaggaatgagtaaaaacagatgggagaagagcaatta 33833517  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 8514013 - 8513961
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||| ||||| |||||||| | ||||| ||||||||||||||||||    
T  8514013 agttaactcacactcgattatttgacaggaatgaacaaaaacagatgggagaa 8513961  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 6620066 - 6620013
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||    
T  6620066 agttaactcacgctcaactattttgacgggaatgagcaaaaacaaatgagagaa 6620013  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 8514054 - 8514082
Alignment:
Q  177 acggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||||||||||||||||||||||    
T  8514054 acggaaatgagcaaaaacagatgggagaa 8514082  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 39555931 - 39555979
Alignment:
Q  93 atctgtttttattcattccagtcctacgtgagttaacgcacgctaaaaa 141  Q
    |||||||||| |||||||  |||||||||||||||||  ||||||||||    
T  39555931 atctgtttttgttcattcatgtcctacgtgagttaacttacgctaaaaa 39555979  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 23252889 - 23252957
Alignment:
Q  147 tatgtaagttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    ||||| |||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  23252889 tatgtgagttaactcacgctcggctattttgacgggaatgagcaaaaccagatgggagaaaagcaatta 23252957  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 2725849 - 2725902
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  2725849 agttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaa 2725902  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 30841169 - 30841112
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaaca 210  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  30841169 agttagctcacactcgactatttgacggaaatgagtaaaaacagataggagaagaaca 30841112  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 2146792 - 2146731
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||| ||||||||||  ||||||||||||||| |||||||| ||||||||||| | ||||||    
T  2146792 agttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaatta 2146731  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 3607063 - 3607117
Alignment:
Q  160 tcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||| ||||||| ||| ||||||||||||| ||||||||||| | ||||||    
T  3607063 tcacgctcaactattttacgaaaatgagcaaaaatagatgggagaagagcaatta 3607117  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 17497670 - 17497609
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||| | ||||| |||||||||| || |||||| ||||||||||||||| | ||||||    
T  17497670 agttaacttatgctcggctatttgacgaaattgagcataaacagatgggagaagagcaatta 17497609  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 20890415 - 20890467
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaa 205  Q
    |||||| ||| ||||||||||||||||  |||||| ||||||| |||||||||    
T  20890415 agttaattcatgctcgactatttgacgagaatgaggaaaaacatatgggagaa 20890467  T

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Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 23253 - 23192
Alignment:
Q  153 agttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||| ||||||||||  ||||||||||||||| |||||||| ||||||||||| | ||||||    
T  23253 agttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaatta 23192  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 14210664 - 14210605
Alignment:
Q  154 gttaactcacgctcgactatttgacggaaatgagcaaaaacagatgggagaaaaacaatta 214  Q
    |||||||||| |||||||||||||||| ||||||| |||| ||||||||||| | ||||||    
T  14210664 gttaactcacactcgactatttgacgggaatgagc-aaaatagatgggagaagatcaatta 14210605  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 21322574 - 21322627
Alignment:
Q  153 agttaactcacgctcgactattt-gacggaaatgagcaaaaacagatgggagaa 205  Q
    ||||||||||| |||| |||||| ||||| | ||||||||||||||||||||||    
T  21322574 agttaactcaccctcggctattttgacgggattgagcaaaaacagatgggagaa 21322627  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 29855986 - 29855941
Alignment:
Q  157 aactcacgctcgactattt-gacggaaatgagcaaaaacagatggg 201  Q
    ||||||||||||||||||| || || ||||||||||||||||||||    
T  29855986 aactcacgctcgactattttgatgggaatgagcaaaaacagatggg 29855941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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