View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196_high_5 (Length: 310)
Name: NF5196_high_5
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 15235624 - 15235335
Alignment:
| Q |
8 |
aagaaaataagcaaatacatgattgatatctagttagattggtaagaccaacgttttttaaggtcaaaccatatgtttcattattgactgagtcaaacaa |
107 |
Q |
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| T |
15235624 |
aagaaaataagcaaatgcatgattgatatctagttagattggtaagaccaacgtttttttaggtcaaaccatatgtttcattattgactgagtcaaacaa |
15235525 |
T |
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| Q |
108 |
aagttggtgcttggtgaactaaaagctgcgttatgtgctcatcatgcatgtaggatttgtttctgacagaattttgcccaagaggctgtatttttaatta |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15235524 |
aagttggtgcttggtgaactaaaagctgctttatgtgctcatcatgcatgtaggatttgtttctgacagaattttgcccaagaggctgtatttttaatta |
15235425 |
T |
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| Q |
208 |
gagattaaacaatgaatacaaggaatgaggataatgtattggaaattttttaactagttccattttttaggtgttagtgatgatgttctt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15235424 |
gagattaaacaatgaatacaaggaatgaggataatgtattggaaaaatcttaactagttccattttttaggtgttagtgatgatgttctt |
15235335 |
T |
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