View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196_high_8 (Length: 254)
Name: NF5196_high_8
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 45533920 - 45533671
Alignment:
| Q |
1 |
ttcattttctcacttttattggtttctttaccttctctcttgcatgttttaaaattgttctttctcatttcttggcgaattgttcattccatttcattga |
100 |
Q |
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| T |
45533920 |
ttcattttctcacttttattggtttctttaccttctctcttgcatgttttaaaattgttctttctcatttcttggcgaattgttcattccatttcattga |
45533821 |
T |
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| Q |
101 |
atgtttcatatctgagttcatactgttgatggatcctattcccctcgtcaaggaatctttcatctatgcaagatgaaaaacaatgagaggttgaatatgc |
200 |
Q |
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| T |
45533820 |
atgtttcatatctgagttcatactgttgatggatcctattcccctcgtcaaggaatctttcatctatgcaagatgaaaaacaatgagaggttgaatatgc |
45533721 |
T |
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| Q |
201 |
cattagcccttatctcttgtaccgggaaccaactgacttttcttctcact |
250 |
Q |
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| T |
45533720 |
cattagcccttatctcttgtaccgggaaccaactgacttttcttctcact |
45533671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 35213343 - 35213217
Alignment:
| Q |
68 |
tttcttggcgaattgttcattccatttcattgaatgtttcatatctgagttcatactgttgatggatcctattcccctcgtcaaggaatctttcatctat |
167 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| |||||||||||| | ||||| || |||||| | || |
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| T |
35213343 |
tttcttggcgaattgttcattccatttccttgaatatttcatatgtgagttca----attgattgatcctattccctccatcaagtaaactttcagcaat |
35213248 |
T |
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| Q |
168 |
gcaagatgaaaaacaatgagaggttgaatat |
198 |
Q |
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| T |
35213247 |
gcatgataaaaaaacatgagaggttgaatat |
35213217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 35216723 - 35216625
Alignment:
| Q |
5 |
ttttctcacttttattggtttctttaccttctctcttgcatgttttaaaattgttctttctcatttcttggcgaattgttcattccatttcattgaatg |
103 |
Q |
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|||||||| ||||||| |||||| |||||| | |||| ||||||||| | ||||||||| ||||||||| |||| |||||||||||| ||||||| |
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| T |
35216723 |
ttttctcatgtttattgctttcttcaccttcacgcttgtatgttttaactctattctttctcctttcttggcaaattattcattccatttacttgaatg |
35216625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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