View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196_low_1 (Length: 518)
Name: NF5196_low_1
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 35355149 - 35354667
Alignment:
| Q |
15 |
aacctgtggaaatatatcacggacaaaataaacaattagcatatggaatgtcactagaaattaggaagctcattagcattgttgaacttacgatggtgtg |
114 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35355149 |
aacctgtggaaatatatcacggagaaaataaacaattagcatatggaatgtgactagaaattaggaagctcgttagcattgttgaacttacgatggtgtg |
35355050 |
T |
|
| Q |
115 |
tatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaaaata |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
35355049 |
tatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaatgaactcaaagttgcaatgacccatgttgttcatgaaatcaatgaaaaaga |
35354950 |
T |
|
| Q |
215 |
tatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgg |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354949 |
catagccatatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgg |
35354850 |
T |
|
| Q |
315 |
gtgtgtcacagctgtcaaaatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagnnnnnnngt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35354849 |
gtgtgtcacagctgtcaaaatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagaaaaaaagt |
35354750 |
T |
|
| Q |
415 |
tcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgct |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
35354749 |
tcatacaagtgataggctcagtaacaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgct |
35354667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 99 - 333
Target Start/End: Complemental strand, 35381071 - 35380837
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35381071 |
aacttacgatggtgtgtatgagagatactttaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatattgttcatg |
35380972 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
298 |
Q |
| |
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|||||||||||||||||||| ||| | | ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35380971 |
aaatcaatgtaaaatatataaccatacaatgcagccacggaagatttattgatgaacaatgttgtcaacattgggatagcaaaaagtgtaaaatatgaca |
35380872 |
T |
|
| Q |
299 |
aatgctccgcaaatgggtgtgtcacagctgtcaaa |
333 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
35380871 |
aatgctccgcaaatgggtgtgcgacagctgtcaaa |
35380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 99 - 330
Target Start/End: Complemental strand, 35370509 - 35370278
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35370509 |
aacttacgatggtgtgtaagagagatacttcaattggggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcatg |
35370410 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
298 |
Q |
| |
|
||||||||| |||| | ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
35370409 |
aaatcaatgaaaaagacatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgaca |
35370310 |
T |
|
| Q |
299 |
aatgctccgcaaatgggtgtgtcacagctgtc |
330 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |
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|
| T |
35370309 |
aatgctcggcaaatgggtgtgccacagctgtc |
35370278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 379 - 497
Target Start/End: Complemental strand, 35379289 - 35379171
Alignment:
| Q |
379 |
cacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatag |
478 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
35379289 |
cacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatag |
35379190 |
T |
|
| Q |
479 |
ataatggtgatgaagtgct |
497 |
Q |
| |
|
|||||| |||||||||||| |
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|
| T |
35379189 |
ataatgatgatgaagtgct |
35379171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 413 - 497
Target Start/End: Complemental strand, 35369896 - 35369812
Alignment:
| Q |
413 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgct |
497 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35369896 |
gttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgct |
35369812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 99 - 331
Target Start/End: Complemental strand, 19684715 - 19684483
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
19684715 |
aacttacgatggtgtgtatgtgagatacttcaattggggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcata |
19684616 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
298 |
Q |
| |
|
||||| |||||||| ||||| ||| | | |||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| || |
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|
| T |
19684615 |
aaatcgatgtaaaagatataaccatacaatgcaaccacactcgattttttcatgaacaatgttgtcaacattggtataagaaaaagtgtgaaatatgcca |
19684516 |
T |
|
| Q |
299 |
aatgctccgcaaatgggtgtgtcacagctgtca |
331 |
Q |
| |
|
| ||| |||||||| |||||||| ||||||| |
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|
| T |
19684515 |
acatctcagcaaatggatgtgtcaccgctgtca |
19684483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 99 - 331
Target Start/End: Original strand, 19630111 - 19630344
Alignment:
| Q |
99 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaaagaactcaaagttgcaatgacccatgttgttcatg |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
19630111 |
aacttacgatggtgtgtacgagagatacttcaataggggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcata |
19630210 |
T |
|
| Q |
199 |
aaatcaatgtaaaatatatagccaaatagtgcagccacagaagattttttgatgaacaatgttg-tcaacattggtatagcaaaaagtgtaaaatatgac |
297 |
Q |
| |
|
||||| |||||||| ||||| ||| | | ||||| | ||| |||||||| | ||||| ||||| |||| ||||| ||| ||||||||| ||||||| | |
|
|
| T |
19630211 |
aaatcgatgtaaaagatataaccatacaccgcagcaatagacgatttttttacgaacattgttgctcaatattgggataaaaaaaagtgtgaaatatgcc |
19630310 |
T |
|
| Q |
298 |
aaatgctccgcaaatgggtgtgtcacagctgtca |
331 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| |
|
|
| T |
19630311 |
aatatctcagcaaatgggtgtatcacagctgtca |
19630344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 413 - 497
Target Start/End: Original strand, 19630480 - 19630564
Alignment:
| Q |
413 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgct |
497 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
19630480 |
gttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgct |
19630564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 413 - 497
Target Start/End: Complemental strand, 19684317 - 19684233
Alignment:
| Q |
413 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgct |
497 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| |||||||||||| |
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|
| T |
19684317 |
gttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgct |
19684233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 2251453 - 2251396
Alignment:
| Q |
153 |
tttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaa |
210 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||| || |||||||||||||||||| |
|
|
| T |
2251453 |
tttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2251396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 2256744 - 2256801
Alignment:
| Q |
153 |
tttcttaggaaagaactcaaagttgcaatgacccatgttgttcatgaaatcaatgtaa |
210 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||| || |||||||||||||||||| |
|
|
| T |
2256744 |
tttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2256801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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