View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5196_low_2 (Length: 455)

Name: NF5196_low_2
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5196_low_2
NF5196_low_2
[»] chr1 (2 HSPs)
chr1 (10-437)||(13385173-13385600)
chr1 (10-75)||(13396127-13396192)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 13385173 - 13385600
Alignment:
Q  10 catcatcaactttttctacctcattagtagcaagattattttgtttagtattggaactcatttttgctaggttcgatctatatggcacacttcgtttgtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13385173 catcatcaactttttctacctcattagtagcaagattattttgtttagtattggaactcatttttgctaggttcgatctatatggcacacttcgtttgtt 13385272  T
Q  110 tgtttgnnnnnnnngggttatttgcttcaactttgtaaccctatatatagacacaatgtatccgtacatatatatcaatgttgcttattaagacacgtag 209  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13385273 tgtttgttttttttgggttatttgcttcaactttgtaaccctatatatagacacaatgtatccgtacatatatatcaatgttgcttattaagacacgtag 13385372  T
Q  210 gaatccaatttgtctaatctttttgtgcacattttcaaacatgtgcaggtaggtgaggnnnnnnnnnttctatttatggaattgtctggtatgatttatt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  13385373 gaatccaatttgtctaatctttttgtgcacattttcaaacatgtgcaggtaggtgaggaaaaaaaaattctatttatggaattgtctggtatgatttatt 13385472  T
Q  310 aggtatagatcattcnnnnnnnagataagtcgacatatagccatgcatctttactcaaattatggnnnnnnntannnnnnnnctactttaagctaactcc 409  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||       ||        ||||||||||||||||||    
T  13385473 aggtatagatcattctttttttagataagtcgacatatagccatgcatctttactcaaattatggaaaaaaatattttttttctactttaagctaactcc 13385572  T
Q  410 cctctaccgttccagaactgatatttct 437  Q
    ||||||||||||||||||||||||||||    
T  13385573 cctctaccgttccagaactgatatttct 13385600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 13396127 - 13396192
Alignment:
Q  10 catcatcaactttttctacctcattagtagcaagattattttgtttagtattggaactcatttttg 75  Q
    |||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||    
T  13396127 catcatcaactttttctacctcattagtaggaatattattttgcttagaattggaactcatttttg 13396192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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