View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196_low_3 (Length: 375)
Name: NF5196_low_3
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 41459610 - 41459280
Alignment:
| Q |
7 |
tcgaagaaaattcaaggctcgcaaagaataaagataaattagtcttaagcaagacaactaagctgaatctagaataacatnnnnnnntcagaaaaggaga |
106 |
Q |
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| T |
41459610 |
tcgaaaaaaattcaaggctcgcaaagaataaagataaattagtcttaagcaagacaactaagctgaatctagaataacataaaaaaatcagaaaaggaga |
41459511 |
T |
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| Q |
107 |
aacgcgaaacaaaaatatggttcgggaacatgaaccggaaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggt |
206 |
Q |
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| T |
41459510 |
aacgcgaaacaaaaatatggttcgggaacatgaaccggaaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggt |
41459411 |
T |
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| Q |
207 |
gaagatgtgacttttgtcacctgttgaaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatca |
306 |
Q |
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| T |
41459410 |
gaagatgtgacttttgtcacctgttggaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatca |
41459311 |
T |
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| Q |
307 |
gacatgttatccaaataatctcttaaattta |
337 |
Q |
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| T |
41459310 |
gacatgttatccaaataatctcttaaattta |
41459280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 41442679 - 41442496
Alignment:
| Q |
145 |
aaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggtgaagatgtgacttttgtcacctgttgaaccatcccttg |
244 |
Q |
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| T |
41442679 |
aaaatacctgtagctagatattcaggagctgcatatccataggttcccattaccctggtgg---agacgtggcttttgtcacctgttggaccatcctttg |
41442583 |
T |
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| Q |
245 |
ccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatcagacatgttatccaaataatctctta |
331 |
Q |
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| T |
41442582 |
ccagcccgaaatcagaaagctttgcattataatcctgcaatcaaatcaagaaatgtatttcaaccatgttttccgaataatctctta |
41442496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 41448902 - 41448864
Alignment:
| Q |
337 |
aaagcaaaagactaaaagtctacaattctacatacagaa |
375 |
Q |
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| T |
41448902 |
aaagcaaaagactaaaagtctacaattctacatacagaa |
41448864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 41459251 - 41459213
Alignment:
| Q |
337 |
aaagcaaaagactaaaagtctacaattctacatacagaa |
375 |
Q |
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| T |
41459251 |
aaagcaaaagactaaaagtctacaattctacatacagaa |
41459213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 41449032 - 41448986
Alignment:
| Q |
203 |
tggtgaagatgtgacttttgtcacctgttgaaccatcccttgccagc |
249 |
Q |
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| T |
41449032 |
tggtggagacgtgacttttctcacctgttggaccatcccttgccagc |
41448986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 41448987 - 41448931
Alignment:
| Q |
281 |
gcaaccaaatacaggaatatgtatcagacatgttatccaaataatctcttaaattta |
337 |
Q |
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| T |
41448987 |
gcaaccaaatccagaaatatgtatcatacatgttaattaaataatctcttacattta |
41448931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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