View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5196_low_4 (Length: 325)
Name: NF5196_low_4
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 9797136 - 9796843
Alignment:
| Q |
20 |
aggagtagcagcaccacaagggcaaatggtcaactagtagtaacaacagaaacaaatggaagcacaagaagccacatgtctttcccttaatctctctttc |
119 |
Q |
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| T |
9797136 |
aggagtagcagcaccacaagggcaaatggtcaactagtagtaacaacagaaacaaatggaagcacaagaagccacatgtctttcccttaatctctctttc |
9797037 |
T |
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| Q |
120 |
aagccctccaatgaccaccgaaaattttgcaatggccaatcacttcacatatattttaccacttcttaacgctctcccctttttctctcctcctcttagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9797036 |
aagccctccaatgaccaccgaaaattttgcaatggccaatcacttcacatatattttaccacttcttaacgctctcccctttttctctcctcctcttagc |
9796937 |
T |
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| Q |
220 |
tttttgattcattattcttcactactttgccatcatcatgtgttttcatcaatatctcctaacccaaacaactacctacacatttttcaatatt |
313 |
Q |
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| T |
9796936 |
tttttgattcattattcttcactactttgccatcatcatgtgttttcatcaatatctcctaacccaaacaactacctacacatttttcaatatt |
9796843 |
T |
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