View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5196_low_8 (Length: 262)
Name: NF5196_low_8
Description: NF5196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5196_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 6464870 - 6464618
Alignment:
| Q |
2 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464870 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
6464771 |
T |
|
| Q |
102 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagttta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464770 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagttta |
6464671 |
T |
|
| Q |
202 |
tgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6464670 |
tgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
6464618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 6473684 - 6473936
Alignment:
| Q |
2 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
101 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||| | || |||||| |||||| |
|
|
| T |
6473684 |
agtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttttgttttcagatgttg |
6473783 |
T |
|
| Q |
102 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagttta |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||| |||| |
|
|
| T |
6473784 |
attatgtgaaggaacttgtggagtggacattgcttgctttaaatagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaattta |
6473883 |
T |
|
| Q |
202 |
tgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||| | |||||||||| |
|
|
| T |
6473884 |
tgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatg |
6473936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 6525908 - 6525656
Alignment:
| Q |
2 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
101 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||| |
|
|
| T |
6525908 |
agtggtttatggtttggtccagctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaagtcttgttctctgatgtta |
6525809 |
T |
|
| Q |
102 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagttta |
201 |
Q |
| |
|
| |||||||| |||||||||||||||||| |||||||| || ||||| ||||||| ||| || ||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
6525808 |
tgtatgtgaagggacttgtggagtggacattacctgctttaaaaagggatggtgttgaagagggttggaaggggtttgtttatgccttgcaagggattta |
6525709 |
T |
|
| Q |
202 |
tgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||||| ||||||||||||| |
|
|
| T |
6525708 |
tgataatgaaagtgcacagcagaagataagaaagttgaagggttttgatgatg |
6525656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 6505017 - 6504765
Alignment:
| Q |
2 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
101 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| |||| |||| || |||||||| |||||||| ||| ||||||||| || ||||| |||||| |
|
|
| T |
6505017 |
agtggactttggtttgctccacctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctgatgttg |
6504918 |
T |
|
| Q |
102 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtg---ttggagaaggatggaaagggtttgtctatgccttggaaggagt |
198 |
Q |
| |
|
||| ||| || || ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || || | ||| | ||||||||| | |
|
|
| T |
6504917 |
attatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattcttatattcattggaaggaat |
6504818 |
T |
|
| Q |
199 |
ttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatg |
251 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6504817 |
ttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6504765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 6462462 - 6462714
Alignment:
| Q |
2 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
101 |
Q |
| |
|
|||||| | ||||||||||| ||||||| | ||||||||| ||||| |||||||||||||||||| |||| ||||||||| | || || || |||||| |
|
|
| T |
6462462 |
agtggactttggtttgctccacctgaatatagagaatgtagacttggaattcagctcttaccattggttcctatttctgaagtattgttctctgatgttg |
6462561 |
T |
|
| Q |
102 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagttta |
201 |
Q |
| |
|
| | ||||||| ||||||| || |||||||||||||||||||| || || ||||||| ||||||||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
6462562 |
aatatgtgaagcaacttgttgaatggacattgcctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgctttacaaggaattta |
6462661 |
T |
|
| Q |
202 |
tgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
|||||| |||| || ||||||||| ||||||| || || || |||||||||| |
|
|
| T |
6462662 |
tgataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatg |
6462714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 6496210 - 6495958
Alignment:
| Q |
2 |
agtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttg |
101 |
Q |
| |
|
|||||| | ||||||||||| || |||| |||||||||||| |||| |||||||||||||||||||||| ||||||||| | || || || |||| | |
|
|
| T |
6496210 |
agtggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgttctctgatgtcg |
6496111 |
T |
|
| Q |
102 |
attttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagttta |
201 |
Q |
| |
|
| | ||||||| ||||||| || ||| |||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
6496110 |
aatatgtgaagcaacttgttgaatgggcattgcctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgccttacaaggaattta |
6496011 |
T |
|
| Q |
202 |
tgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
|||||| |||| || ||||||||| ||||||| || || || |||||||||| |
|
|
| T |
6496010 |
tgataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatg |
6495958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 251
Target Start/End: Original strand, 6516811 - 6517003
Alignment:
| Q |
59 |
ttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttg |
158 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| ||||||||| |||||| |||||||| |||||| |||||||| |||| || | | ||||| || |
|
|
| T |
6516811 |
ttaccattgtgtccaatttctgaagttttattttctgatgttgattatgtgaaagaacttgttgagtgggcattgcctcctttcaaaacgttaggtgctg |
6516910 |
T |
|
| Q |
159 |
gagaaggatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatg |
251 |
Q |
| |
|
| | |||||| || ||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516911 |
aaaacagatggacgggatttcggtatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg |
6517003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 1842402 - 1842529
Alignment:
| Q |
9 |
tatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttgattttgt |
108 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||| || ||||||||||||||| | || || ||||||||| | || | || ||||| | | ||| |
|
|
| T |
1842402 |
tatggtttggtcctgctgagtggaaagaatgttggctcggcattcagctcttaccactactccctatttctgaaattttgtcctctgatgttaagtatgt |
1842501 |
T |
|
| Q |
109 |
gaaggaacttgtggagtggacattgcct |
136 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
1842502 |
gaagggacttgtggagtggacattgcct |
1842529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 6456816 - 6456658
Alignment:
| Q |
96 |
atgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaagg |
195 |
Q |
| |
|
|||||| || ||| ||||| |||||||| |||||||| ||| |||||||||| |||||||||| ||||| |||||||| ||| | ||||| ||||||| |
|
|
| T |
6456816 |
atgttggttatgtaaaggagcttgtggaatggacattacctaatttgaataggaaaggtgttggtgaagggtggaaaggttttatatatgctatggaagg |
6456717 |
T |
|
| Q |
196 |
agtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
||||||||| |||||| ||| | ||| ||||| | ||||| ||||||||||||| |
|
|
| T |
6456716 |
tacttatgataaacaaagtgctttgcaaaaggtaagaggattgaagggttttgatgatg |
6456658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 6521255 - 6521419
Alignment:
| Q |
43 |
gcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgctttg |
142 |
Q |
| |
|
|||||| |||||| | |||||||||||||| ||||| ||| | || ||||| ||||||| ||||||||||| ||||||| ||| ||||||| |||| |
|
|
| T |
6521255 |
gcttggcattcaggttttaccattgcttcctatttcagaaatgttgttttctgatgttgaatttgtgaaggatgttgtggaatgggtgttgcctgatttg |
6521354 |
T |
|
| Q |
143 |
aatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagtttatgataa |
207 |
Q |
| |
|
| || || |||||||| ||||||||||| || ||||| ||||| || | ||| |||||||||| |
|
|
| T |
6521355 |
gaaagtgatggtgttggtgaaggatggaagggatttgtgtatgctttaaagggaatttatgataa |
6521419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 1832378 - 1832441
Alignment:
| Q |
9 |
tatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttcc |
72 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||| || ||||||||||||||||| ||||| |
|
|
| T |
1832378 |
tatggtttggtcctgctgagtggaaagaatgtcggctcggcattcagctcttaccatttcttcc |
1832441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 13054173 - 13054292
Alignment:
| Q |
40 |
taggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgcctgct |
139 |
Q |
| |
|
||||||||| ||| || | ||||||||| ||||| ||||||| | |||||||| ||||| || ||||||| | |||||||| | ||| |||||| | |
|
|
| T |
13054173 |
taggcttggtatttaggtattaccattgtgtccaaattctgaagttttattttctgatgttacttatgtgaagaatcttgtggaacgtacaatgcctgat |
13054272 |
T |
|
| Q |
140 |
ttgaatagggaaggtgttgg |
159 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
13054273 |
ttgaaaagggaaggtgttgg |
13054292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 1846158 - 1846085
Alignment:
| Q |
9 |
tatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaa |
82 |
Q |
| |
|
||||||||| |||| | || |||||||||||| ||||||| ||| ||||||| ||||| |||| ||||||||| |
|
|
| T |
1846158 |
tatggtttggtcctgcagagtggaaagaatgtcggcttggcattgagctcttgccattttttcctatttctgaa |
1846085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 1847044 - 1847085
Alignment:
| Q |
29 |
tggaaagaatgtaggcttgggattcagctcttaccattgctt |
70 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
1847044 |
tggaaagaatgtcggctcggaattcagctcttaccattgctt |
1847085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 46382930 - 46382867
Alignment:
| Q |
29 |
tggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttatttt |
92 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||| |||| ||||||||| |||| |||| |
|
|
| T |
46382930 |
tggaaggaacgtagccttgggattcagctcttaccattgtttcctatttctgaagtcttgtttt |
46382867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 3754632 - 3754700
Alignment:
| Q |
165 |
gatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaa |
233 |
Q |
| |
|
|||||||||||||| ||||| | ||| ||||| |||||||||| |||| || |||||||||||| |||| |
|
|
| T |
3754632 |
gatggaaagggtttatctattctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaa |
3754700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 4045610 - 4045517
Alignment:
| Q |
161 |
gaaggatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatg |
254 |
Q |
| |
|
||||| |||||||||||| |||||| ||| |||| ||||||||||| | | || ||||||||| || |||| ||||| ||||||||||||| |
|
|
| T |
4045610 |
gaaggttggaaagggtttacctatgctttgcaaggtgtttatgataagaagaatgcattgaagaatattagaatgttgaaaggttttgatgatg |
4045517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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