View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5197-Insertion-4 (Length: 205)
Name: NF5197-Insertion-4
Description: NF5197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5197-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 46502542 - 46502724
Alignment:
| Q |
8 |
ttttgaataaacaataattttcatgctaaatatgtgaaaatttcacacaataatgatgtaaatctatcaaaaaatttaacacattagtgtcttctttgtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46502542 |
ttttgaataaacaataattttcatgctaaatatgtgaaaatttcacacaataatcct-taaatctatcaaaaattttaacacattagtgtcttctttgtg |
46502640 |
T |
|
| Q |
108 |
ataattttatgtattgaccaataaatttttagtaaaacttttttatttgaataagccaacagatttttatcaaaacaaaacaaa |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46502641 |
ataattttatgtattgaccaataaatttttactaaaacttttttatttgaataagccaacagatttttattaaaacaaaacaaa |
46502724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University