View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5197-Insertion-5 (Length: 238)

Name: NF5197-Insertion-5
Description: NF5197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5197-Insertion-5
NF5197-Insertion-5
[»] chr6 (2 HSPs)
chr6 (23-238)||(7544578-7544795)
chr6 (23-238)||(7554356-7554573)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 7544795 - 7544578
Alignment:
Q  23 cgtagtggccgtacaagttcccagcaactcttttcaccaccatcctccgcggtaaacttcggcaccgacctcgtcaccttccgatcttgcctcgtcttca 122  Q
    |||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||    
T  7544795 cgtaatggccggacaagttcccagaaactcttttcaccaccgtcctccgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttca 7544696  T
Q  123 tatcactcaaatccatttgc-atggaaactttacagtcccaaatataccagtataactcttcctatcactgctacttctctgccaccggctttccct-cc 220  Q
    |||||||||  ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  7544695 tatcactcagttccatttgcaatggaaacttcaccgtcccaaatataccagtataactcttcctatcactgctacttctctgccaccggttttccctccc 7544596  T
Q  221 tgatggcgaccggagtcc 238  Q
     ||||||||||| |||||    
T  7544595 ggatggcgaccgcagtcc 7544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 7554573 - 7554356
Alignment:
Q  23 cgtagtggccgtacaagttcccagcaactcttttcaccaccatcctccgcggtaaacttcggcaccgacctcgtcaccttccgatcttgcctcgtcttca 122  Q
    |||| |||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||| || |||||||||||||||||||||||    
T  7554573 cgtaatggccggataagttcccagcaactcttttcaccaccgtcctctgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttca 7554474  T
Q  123 tatcactcaaatccatttgc-atggaaactttacagtcccaaatataccagtataactcttcctatcactgctacttctctgccaccggctttccct-cc 220  Q
    |||||||||  ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  7554473 tatcactcagttccatttgcaatggaaacttcaccgtcccaaatataccagtataactcttcctatcactgctacttctctgccaccggttttccctccc 7554374  T
Q  221 tgatggcgaccggagtcc 238  Q
     ||||||||||| |||||    
T  7554373 ggatggcgaccgcagtcc 7554356  T

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