View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5197_high_1_N (Length: 365)
Name: NF5197_high_1_N
Description: NF5197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5197_high_1_N |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 36296 - 36652
Alignment:
| Q |
1 |
caacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgggcaatgttcatttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
36296 |
caacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttatgttggttgtattttgggcaatgttcatttca |
36395 |
T |
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| Q |
101 |
tatatgaagatgtagtgtaatgactcagttcaaatgttaaatcaatgttatgaagtttatgacattgttgattgtaatgaaaagaagttgtgtttcttga |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396 |
tatatgaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaagtttatgacattgttgattgtaatgaaaagaagttgtgtttcttga |
36495 |
T |
|
| Q |
201 |
ataaatgaaatgaagtttgtttgtcatgctattgttgtctgcttgttcattactttgtgattcactgttaaagtaatatgattatagttagcaaagttgt |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36496 |
atcaatgaaatgaagtttgtttgtcatgctattgttgtatgcttgttcattagtttgtgattcactgttaaagtaatatgattatagtaagcaaagttgt |
36595 |
T |
|
| Q |
301 |
agacataattgtcttctttcataccaaaatgcaccaaaatggtcattactaacacca |
357 |
Q |
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|| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36596 |
agtcataattatcttgtttcatagcaaaatgcaccaaaatggtcattactaacacca |
36652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23573603 - 23573754
Alignment:
| Q |
1 |
caacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgggcaatgttcatttca |
100 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| || |
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| T |
23573603 |
caacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtttatgtttacattggttgtatcttgggcaatgttcattaca |
23573702 |
T |
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| Q |
101 |
tatatgaagatgtagtgtaatgactcagttcaaatgttaaatcaatgttatgaa |
154 |
Q |
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||| ||| |||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
23573703 |
tatctgacgatgtagtgtgat--ctcggttcaaatgttaaatcaatgttatgaa |
23573754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 31815023 - 31814943
Alignment:
| Q |
5 |
aaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
85 |
Q |
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||||| |||||||| ||||||||||| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
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| T |
31815023 |
aaaaacgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13507539 - 13507611
Alignment:
| Q |
1 |
caacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttg |
73 |
Q |
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||||||||| ||||||||||||||||||||| |||| ||||| ||| | |||||||||||||||||| ||||| |
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| T |
13507539 |
caacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtttatggttttgttg |
13507611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 13507709 - 13507638
Alignment:
| Q |
2 |
aacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttg |
73 |
Q |
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|||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| || ||||| |
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| T |
13507709 |
aacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtttatgattttgttg |
13507638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 7799468 - 7799387
Alignment:
| Q |
5 |
aaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
86 |
Q |
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|||||||||||||| ||||||||||| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
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| T |
7799468 |
aaaaatgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 19398569 - 19398488
Alignment:
| Q |
5 |
aaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
86 |
Q |
| |
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||||||||||| || ||||||||||| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
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| T |
19398569 |
aaaaatgagaatttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 3510 - 3429
Alignment:
| Q |
5 |
aaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
86 |
Q |
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||||| |||||||| ||||||||||| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
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| T |
3510 |
aaaaacgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 22059416 - 22059336
Alignment:
| Q |
5 |
aaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
85 |
Q |
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||||| |||||||| ||||||||||| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
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| T |
22059416 |
aaaaacgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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